Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2277 ATGGGGAAGAAATGGAGATGGGGAGAGCCATTGTTGTTAATCAATAATATCTTCATTGTGGGATGGATGGCCAGTGTTATCAATGGAGCTACGGATCCAGGAGATGCGTCTGCCCTGAATGCCATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA 2172 44.29 MGKKWRWGEPLLLINNIFIVGWMASVINGATDPGDASALNAMYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46301876 46309521 + Sed0021511.1 Sed06g2277 718820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2277 723 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 382 495 - -
Sed06g2277 723 PANTHER LEUCINE RICH REPEAT KINASE 2 299 692 IPR051420 -
Sed06g2277 723 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Sed06g2277 723 MobiDBLite consensus disorder prediction 323 343 - -
Sed06g2277 723 Pfam Protein tyrosine and serine/threonine kinase 420 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2277 723 Gene3D Transferase(Phosphotransferase) domain 1 497 713 - -
Sed06g2277 723 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 32 258 - -
Sed06g2277 723 SUPERFAMILY L domain-like 31 237 - -
Sed06g2277 723 SUPERFAMILY Protein kinase-like (PK-like) 400 690 IPR011009 -
Sed06g2277 723 MobiDBLite consensus disorder prediction 701 723 - -
Sed06g2277 723 Gene3D Phosphorylase Kinase; domain 1 383 495 - -
Sed06g2277 723 MobiDBLite consensus disorder prediction 249 270 - -
Sed06g2277 723 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Sed06g2277 723 MobiDBLite consensus disorder prediction 708 723 - -
Sed06g2277 723 ProSiteProfiles Protein kinase domain profile. 418 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2277 723 MobiDBLite consensus disorder prediction 329 343 - -
Sed06g2277 723 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 496 704 - -
Sed06g2277 723 MobiDBLite consensus disorder prediction 366 386 - -
Sed06g2277 723 Gene3D Ribonuclease Inhibitor 32 253 IPR032675 -
Sed06g2277 723 CDD STKc_IRAK 424 693 - -
Sed06g2277 723 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2358 Sed-Chr4:37053158 Sed06g2277 Sed-Chr6:46301876 2.90E-215 dispersed
Sed06g2277 Sed-Chr6:46301876 Sed06g2279 Sed-Chr6:46301876 0.00E+00 dispersed
Sed06g2277 Sed-Chr6:46301876 Sed06g2278 Sed-Chr6:46301876 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79411 PF07714 PK_Tyr_Ser-Thr 4.30E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2277 - - - 0.0