Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2278 | ATGGAGCTACGGATCCAGGAGATGAGTTCAAGCATCACTTTTCTTCTTCCTCAATGTTCTGCACTGTATATTCTGGAAAGCAACCTGGATGTTCCTTATATTATATGTTTTCAGCTGGAATTTTGTTCTTACTTCAGAAGACCTCTAACCCTTGAAAAGAAGAATGATTTGAACAACTTTTCACACTACCCACATGCGTCTGCCCTGAATGCCATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA | 2262 | 43.77 | MELRIQEMSSSITFLLPQCSALYILESNLDVPYIICFQLEFCSYFRRPLTLEKKNDLNNFSHYPHASALNAMYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 46301876 | 46309521 | + | Sed0021511.2 | Sed06g2278 | 718821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2278 | 753 | ProSitePatterns | Protein kinases ATP-binding region signature. | 454 | 477 | IPR017441 | GO:0005524(InterPro) | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 359 | 373 | - | - | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 396 | 416 | - | - | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 738 | 753 | - | - | |
Sed06g2278 | 753 | ProSiteProfiles | Protein kinase domain profile. | 448 | 723 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2278 | 753 | SUPERFAMILY | Protein kinase-like (PK-like) | 430 | 720 | IPR011009 | - | |
Sed06g2278 | 753 | Gene3D | Phosphorylase Kinase; domain 1 | 413 | 525 | - | - | |
Sed06g2278 | 753 | Gene3D | Ribonuclease Inhibitor | 64 | 283 | IPR032675 | - | |
Sed06g2278 | 753 | CDD | STKc_IRAK | 454 | 723 | - | - | |
Sed06g2278 | 753 | Pfam | Protein tyrosine and serine/threonine kinase | 450 | 720 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g2278 | 753 | Pfam | Leucine rich repeat N-terminal domain | 67 | 103 | IPR013210 | - | |
Sed06g2278 | 753 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 526 | 734 | - | - | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 731 | 753 | - | - | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 353 | 373 | - | - | |
Sed06g2278 | 753 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 412 | 525 | - | - | |
Sed06g2278 | 753 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 247 | 722 | IPR051420 | - | |
Sed06g2278 | 753 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 62 | 288 | - | - | |
Sed06g2278 | 753 | Gene3D | Transferase(Phosphotransferase) domain 1 | 527 | 743 | - | - | |
Sed06g2278 | 753 | MobiDBLite | consensus disorder prediction | 279 | 300 | - | - | |
Sed06g2278 | 753 | Pfam | Leucine Rich Repeat | 152 | 174 | IPR001611 | GO:0005515(InterPro) | |
Sed06g2278 | 753 | SUPERFAMILY | L domain-like | 65 | 267 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2278 | Sed-Chr6:46301876 | Sed11g1725 | Sed-Chr11:32358988 | 1.80E-154 | dispersed | |
Sed06g2277 | Sed-Chr6:46301876 | Sed06g2278 | Sed-Chr6:46301876 | 0.00E+00 | tandem | |
Sed06g2278 | Sed-Chr6:46301876 | Sed06g2279 | Sed-Chr6:46301876 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79412 | PF07714 | PK_Tyr_Ser-Thr | 4.70E-42 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2278 | - | - | - | 0.0 |