Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2278 ATGGAGCTACGGATCCAGGAGATGAGTTCAAGCATCACTTTTCTTCTTCCTCAATGTTCTGCACTGTATATTCTGGAAAGCAACCTGGATGTTCCTTATATTATATGTTTTCAGCTGGAATTTTGTTCTTACTTCAGAAGACCTCTAACCCTTGAAAAGAAGAATGATTTGAACAACTTTTCACACTACCCACATGCGTCTGCCCTGAATGCCATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA 2262 43.77 MELRIQEMSSSITFLLPQCSALYILESNLDVPYIICFQLEFCSYFRRPLTLEKKNDLNNFSHYPHASALNAMYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46301876 46309521 + Sed0021511.2 Sed06g2278 718821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2278 753 ProSitePatterns Protein kinases ATP-binding region signature. 454 477 IPR017441 GO:0005524(InterPro)
Sed06g2278 753 MobiDBLite consensus disorder prediction 359 373 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 396 416 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 738 753 - -
Sed06g2278 753 ProSiteProfiles Protein kinase domain profile. 448 723 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2278 753 SUPERFAMILY Protein kinase-like (PK-like) 430 720 IPR011009 -
Sed06g2278 753 Gene3D Phosphorylase Kinase; domain 1 413 525 - -
Sed06g2278 753 Gene3D Ribonuclease Inhibitor 64 283 IPR032675 -
Sed06g2278 753 CDD STKc_IRAK 454 723 - -
Sed06g2278 753 Pfam Protein tyrosine and serine/threonine kinase 450 720 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2278 753 Pfam Leucine rich repeat N-terminal domain 67 103 IPR013210 -
Sed06g2278 753 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 526 734 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 731 753 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 353 373 - -
Sed06g2278 753 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 412 525 - -
Sed06g2278 753 PANTHER LEUCINE RICH REPEAT KINASE 2 247 722 IPR051420 -
Sed06g2278 753 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 62 288 - -
Sed06g2278 753 Gene3D Transferase(Phosphotransferase) domain 1 527 743 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 279 300 - -
Sed06g2278 753 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
Sed06g2278 753 SUPERFAMILY L domain-like 65 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2278 Sed-Chr6:46301876 Sed11g1725 Sed-Chr11:32358988 1.80E-154 dispersed
Sed06g2277 Sed-Chr6:46301876 Sed06g2278 Sed-Chr6:46301876 0.00E+00 tandem
Sed06g2278 Sed-Chr6:46301876 Sed06g2279 Sed-Chr6:46301876 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed01g1998 . 391 684 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g1999 . 297 590 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2000 . 274 567 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2001 . 246 539 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed08g1942 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.2e-83 308.9
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed06g2277 . 1 707 Strubbelig Receptor Gene Family AT1G53730 61.3 1.8e-212 736.9
Sed06g2278 . 67 737 Strubbelig Receptor Gene Family AT1G53730 63.0 3.9e-207 719.2
Sed06g2279 . 1 666 Strubbelig Receptor Gene Family AT1G53730 62.8 4.7e-205 712.2
Sed04g2358 . 4 714 Strubbelig Receptor Gene Family AT1G53730 60.7 2.2e-186 650.2
Sed03g1214 . 2 679 Strubbelig Receptor Gene Family AT1G53730 52.3 2.9e-154 543.5
Sed01g2000 . 268 590 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed01g2001 . 240 562 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed06g2277 . 19 711 Strubbelig Receptor Gene Family AT3G14350 52.5 6.4e-183 638.6
Sed06g2278 . 67 741 Strubbelig Receptor Gene Family AT3G14350 52.4 1.4e-177 620.9
Sed06g2279 . 1 670 Strubbelig Receptor Gene Family AT3G14350 52.2 1.7e-175 614.0
Sed04g2358 . 11 704 Strubbelig Receptor Gene Family AT3G14350 53.9 1.2e-165 581.3
Sed01g2001 . 1 569 Strubbelig Receptor Gene Family AT4G22130 64.3 8.3e-181 631.3
Sed01g2000 . 21 597 Strubbelig Receptor Gene Family AT4G22130 62.2 5.8e-174 608.6
Sed01g1998 . 339 714 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed01g1999 . 245 620 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed08g1942 . 341 708 Strubbelig Receptor Gene Family AT4G22130 81.5 9.2e-172 601.3
Sed06g2277 . 401 722 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2278 . 431 752 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2279 . 360 681 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed04g2358 . 393 706 Strubbelig Receptor Gene Family AT4G22130 63.9 6.1e-115 412.5
Sed04g3333 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3334 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3335 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed05g1967 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed05g1968 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed03g1214 . 376 693 Strubbelig Receptor Gene Family AT4G22130 56.3 7.7e-102 369.0
Sed11g1725 . 324 667 Strubbelig Receptor Gene Family AT4G22130 52.3 3.1e-95 347.1
Sed14g1427 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
Sed14g1428 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79412 PF07714 PK_Tyr_Ser-Thr 4.70E-42 CL0016 Sed PK