Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2278 ATGGAGCTACGGATCCAGGAGATGAGTTCAAGCATCACTTTTCTTCTTCCTCAATGTTCTGCACTGTATATTCTGGAAAGCAACCTGGATGTTCCTTATATTATATGTTTTCAGCTGGAATTTTGTTCTTACTTCAGAAGACCTCTAACCCTTGAAAAGAAGAATGATTTGAACAACTTTTCACACTACCCACATGCGTCTGCCCTGAATGCCATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA 2262 43.77 MELRIQEMSSSITFLLPQCSALYILESNLDVPYIICFQLEFCSYFRRPLTLEKKNDLNNFSHYPHASALNAMYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46301876 46309521 + Sed0021511.2 Sed06g2278 718821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2278 753 ProSitePatterns Protein kinases ATP-binding region signature. 454 477 IPR017441 GO:0005524(InterPro)
Sed06g2278 753 MobiDBLite consensus disorder prediction 359 373 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 396 416 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 738 753 - -
Sed06g2278 753 ProSiteProfiles Protein kinase domain profile. 448 723 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2278 753 SUPERFAMILY Protein kinase-like (PK-like) 430 720 IPR011009 -
Sed06g2278 753 Gene3D Phosphorylase Kinase; domain 1 413 525 - -
Sed06g2278 753 Gene3D Ribonuclease Inhibitor 64 283 IPR032675 -
Sed06g2278 753 CDD STKc_IRAK 454 723 - -
Sed06g2278 753 Pfam Protein tyrosine and serine/threonine kinase 450 720 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2278 753 Pfam Leucine rich repeat N-terminal domain 67 103 IPR013210 -
Sed06g2278 753 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 526 734 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 731 753 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 353 373 - -
Sed06g2278 753 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 412 525 - -
Sed06g2278 753 PANTHER LEUCINE RICH REPEAT KINASE 2 247 722 IPR051420 -
Sed06g2278 753 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 62 288 - -
Sed06g2278 753 Gene3D Transferase(Phosphotransferase) domain 1 527 743 - -
Sed06g2278 753 MobiDBLite consensus disorder prediction 279 300 - -
Sed06g2278 753 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
Sed06g2278 753 SUPERFAMILY L domain-like 65 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2278 Sed-Chr6:46301876 Sed11g1725 Sed-Chr11:32358988 1.80E-154 dispersed
Sed06g2277 Sed-Chr6:46301876 Sed06g2278 Sed-Chr6:46301876 0.00E+00 tandem
Sed06g2278 Sed-Chr6:46301876 Sed06g2279 Sed-Chr6:46301876 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79412 PF07714 PK_Tyr_Ser-Thr 4.70E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2278 - - - 0.0