Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2279 | ATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA | 2049 | 44.12 | MYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP | 682 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 46301876 | 46309521 | + | Sed0021511.3 | Sed06g2279 | 718822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2279 | 682 | CDD | STKc_IRAK | 383 | 652 | - | - | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 288 | 302 | - | - | |
Sed06g2279 | 682 | Pfam | Protein tyrosine and serine/threonine kinase | 379 | 649 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g2279 | 682 | Gene3D | Ribonuclease Inhibitor | 3 | 145 | IPR032675 | - | |
Sed06g2279 | 682 | ProSiteProfiles | Protein kinase domain profile. | 377 | 652 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 660 | 682 | - | - | |
Sed06g2279 | 682 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 341 | 454 | - | - | |
Sed06g2279 | 682 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 259 | 651 | IPR051420 | - | |
Sed06g2279 | 682 | ProSitePatterns | Protein kinases ATP-binding region signature. | 383 | 406 | IPR017441 | GO:0005524(InterPro) | |
Sed06g2279 | 682 | Gene3D | Phosphorylase Kinase; domain 1 | 342 | 454 | - | - | |
Sed06g2279 | 682 | Pfam | Leucine Rich Repeat | 81 | 103 | IPR001611 | GO:0005515(InterPro) | |
Sed06g2279 | 682 | Pfam | Leucine Rich Repeat | 176 | 196 | IPR001611 | GO:0005515(InterPro) | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 282 | 302 | - | - | |
Sed06g2279 | 682 | SUPERFAMILY | Protein kinase-like (PK-like) | 359 | 649 | IPR011009 | - | |
Sed06g2279 | 682 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 1 | 217 | - | - | |
Sed06g2279 | 682 | Gene3D | Ribonuclease Inhibitor | 146 | 207 | IPR032675 | - | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
Sed06g2279 | 682 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 455 | 663 | - | - | |
Sed06g2279 | 682 | Pfam | Leucine rich repeat N-terminal domain | 3 | 32 | IPR013210 | - | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 325 | 345 | - | - | |
Sed06g2279 | 682 | MobiDBLite | consensus disorder prediction | 667 | 682 | - | - | |
Sed06g2279 | 682 | SUPERFAMILY | L domain-like | 5 | 196 | - | - | |
Sed06g2279 | 682 | Gene3D | Transferase(Phosphotransferase) domain 1 | 456 | 672 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2277 | Sed-Chr6:46301876 | Sed06g2279 | Sed-Chr6:46301876 | 0.00E+00 | dispersed | |
Sed06g2279 | Sed-Chr6:46301876 | Sed11g1725 | Sed-Chr11:32358988 | 1.20E-152 | dispersed | |
Sed06g2278 | Sed-Chr6:46301876 | Sed06g2279 | Sed-Chr6:46301876 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79413 | PF07714 | PK_Tyr_Ser-Thr | 3.80E-42 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2279 | - | - | - | 0.0 |