Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2279 ATGTATACAAGTTTAAACTCGCCTCCAATTCTAACTCTATGGACGGCAAGTGGTGGAGATCCATGTGGTCAGCTTTGGAAAGGCATTACTTGCTCAGGCTTACGGGTCACAGAAATTTCATTATCTGGTTTAGGACTTTCTGGATCATTGGGATATCAGCTTGCAAGTTTGACATCTCTAATTAATTTAGATGTGAGCATCAACAACCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGTCTCCCCTATTCTATTTCCCAAATGAGTTCGCTCATTTCCTTGAACATCAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGCTCTGGAAGCTCTCTTCCCTGTCTATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAATGTCTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTACAAAACTTGAATGTGGAGAACAACAATTTTACCGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGCTGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGCACACCTCCAGCGAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGATTAGTGGTGCTACTGGTGGAGATAGCAGAAGATCAGGAATGAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACTTAGAAAAGCAAAAGCTTGGGAGCCAGCCTAACCTGTCTCCTACTTCAAATGTATTGCAAGAAATGAAGCTTATTCAAACTTCATCCTCATTTGATGCAAAGACATTGGATTCTCATGCTTCAATCAATCTGAAACCCCCACCTATGGATCGTCATAAATCATTCGATGACAATGATTCATTGACAAAACCTGTCGTGAAGAAGACCGACGTTGCTCCTGAGATAAGTGTGAAGTCGTATTCTATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAATGTAGATAACCTTCTTGGCGAGGGATCATTTGGGCGCGTTTATCGGGCTCAGTTTGACGATGGGAAGGTTCTGGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCCAGAGAATTGTTGGATGATTTCACAGAGATAGTTGCTAATGTATCTCGGTTGCATCATCCTAATGTCACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGCGTCAAGATTGCTTTGGGGACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCGGTTGTTCACAGAAATATAAAGTCGGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTACCTTTATAGCCAATCTAGATGAGGCATTGGATCAGCAGGCAGTATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTTATGTTAGAACTTCTATGCGGACGTAAGCCGTTTGATAGTTCGAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATACTGCACTTAAAGGTCTGTACCCAGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTATGCGTCCAGCCCGAGCCCGAATTCAGACCTCCCATGTCCGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCTAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACCGATGAACCTGATGCACATGAGATACCTTAA 2049 44.12 MYTSLNSPPILTLWTASGGDPCGQLWKGITCSGLRVTEISLSGLGLSGSLGYQLASLTSLINLDVSINNLGPDIPYQLPQNLQKLNFGWNNFSGSLPYSISQMSSLISLNISHNQLQNQVNDMLWKLSSLSMLDVSFNFLSGALPQCLSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQAGGNSWSYGLAPPPPPGTPPANQNYRYHKPGNNYSPLISGATGGDSRRSGMSGGAIAGILISVLVVGAVLAYLLVKRRPKKSSTDLEKQKLGSQPNLSPTSNVLQEMKLIQTSSSFDAKTLDSHASINLKPPPMDRHKSFDDNDSLTKPVVKKTDVAPEISVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAQFDDGKVLAVKKIDSAAFPRELLDDFTEIVANVSRLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLATFIANLDEALDQQAVSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDTALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHEIP 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46301876 46309521 + Sed0021511.3 Sed06g2279 718822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2279 682 CDD STKc_IRAK 383 652 - -
Sed06g2279 682 MobiDBLite consensus disorder prediction 288 302 - -
Sed06g2279 682 Pfam Protein tyrosine and serine/threonine kinase 379 649 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2279 682 Gene3D Ribonuclease Inhibitor 3 145 IPR032675 -
Sed06g2279 682 ProSiteProfiles Protein kinase domain profile. 377 652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2279 682 MobiDBLite consensus disorder prediction 660 682 - -
Sed06g2279 682 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 341 454 - -
Sed06g2279 682 PANTHER LEUCINE RICH REPEAT KINASE 2 259 651 IPR051420 -
Sed06g2279 682 ProSitePatterns Protein kinases ATP-binding region signature. 383 406 IPR017441 GO:0005524(InterPro)
Sed06g2279 682 Gene3D Phosphorylase Kinase; domain 1 342 454 - -
Sed06g2279 682 Pfam Leucine Rich Repeat 81 103 IPR001611 GO:0005515(InterPro)
Sed06g2279 682 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515(InterPro)
Sed06g2279 682 MobiDBLite consensus disorder prediction 282 302 - -
Sed06g2279 682 SUPERFAMILY Protein kinase-like (PK-like) 359 649 IPR011009 -
Sed06g2279 682 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 217 - -
Sed06g2279 682 Gene3D Ribonuclease Inhibitor 146 207 IPR032675 -
Sed06g2279 682 MobiDBLite consensus disorder prediction 208 229 - -
Sed06g2279 682 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 455 663 - -
Sed06g2279 682 Pfam Leucine rich repeat N-terminal domain 3 32 IPR013210 -
Sed06g2279 682 MobiDBLite consensus disorder prediction 325 345 - -
Sed06g2279 682 MobiDBLite consensus disorder prediction 667 682 - -
Sed06g2279 682 SUPERFAMILY L domain-like 5 196 - -
Sed06g2279 682 Gene3D Transferase(Phosphotransferase) domain 1 456 672 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2277 Sed-Chr6:46301876 Sed06g2279 Sed-Chr6:46301876 0.00E+00 dispersed
Sed06g2279 Sed-Chr6:46301876 Sed11g1725 Sed-Chr11:32358988 1.20E-152 dispersed
Sed06g2278 Sed-Chr6:46301876 Sed06g2279 Sed-Chr6:46301876 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79413 PF07714 PK_Tyr_Ser-Thr 3.80E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2279 - - - 0.0