Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2286 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGTCGGAAAACTCGCCGCCGGCTGATCATACTCGTTGTCTCCGTTATTCTTCTAATCTGCATTGTCATCGGCGCCGCGGTCGGAATCGTGATTCACAAACGGAACTCTTCGTCTTCATCGCCGAAGAGCACGCCTCCTCCGACGGAGCTCGCTCCCGCAGCCTCACTCAAAACTCTCTGCAGTGTGACTCAGTATCCGAGTTCCTGCCAGTCCTCTCTCGAAAACTCAAACACCACCGATCTGGTGTTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGCTCTCTAAACTCGCCGATTACGCCTCTAAACTCAATTCCAGCACCGCCGATCCGAATCTCAGAGCCGCTATCGGAGTCTGCCAGAGTGTTCTCGAAGACGCGATTGAGACGCTGAACGACACCGTTTCGTCCATGGAAGTAGATCGAAATGGCGAGAAGTTCTTGTCGCCGTCGAGGATTCAAGATCTGAAAACCTGGCTGAGCACCACCATCACCGACCAGGAAACCTGCCTCGACGCCGTTCGAGATCTGAACCAGACGGCGGTTCTCGAGGATTTGCAAACGGCAATGGAGAACTCCACCGAGTTCACCAGCAATAGCCTAGCGATTGTAACGAAAATCCTAGGGGTATTGTCGGATTTCAACATTCCAATCCACCGGAGGCTGCTGGAATTCCCGGAGTGGGTGAGTTCCGGCGACCGGAGGCTTCTTCAGGCGAGTAATGTGACGGCGCACGTGACGGTTTCGAAGGACGGGACAGGGAATTTTGCGACGATTAAAGCGGCCGTAGCGGCGGTGCCGAAGAAGAGTAAAGAGAGATTCGTGATATATGTGAAAGAAGGAATATATGAAGAGAATGTGATTCTGGATAAGAACAAGTGGAATGTTATGATGTTCGGAGATGGCAGAACCAAAACCATTGTTTCCGGCAGCCTCAACTTCGTCGACGGCACGCCCACCTTCTCCACAGCCACTTTCGCTGTGGCTGGCAAAGGCTTCATTGGCAAGGATATGGGCTTCATCAACACGGCTGGTCCAGCCAAACACCAGGCTGTTGCTTTCCGCTCGGGCTCCGACCTCTCTGTAATGTATGGATGCTCATTCGACGCCTATCAAGACACTCTCTACGCTCATTCCAACCGCCAATTCTATCGCAACTGTGAGATCACCGGCACCATCGATTTCATGTTCGGCAATGCCGCCGTCGTGTTCCAGAGCTGCAACATCCGGCCGAGGCAGCCACTCCCCAACCAATTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAATCAAAACACTGGCATTTCCATTCAGAAGTGCAGTTTTTCGGCCTACAACGATAGTCTCTCCGCCCTGACTTACTTGGGGCGGCCATGGAAGGAGTTTTCAACCACCGTGATTATGCAGTCGGAGATCGGCGGGTTCCTGCAACCGGTCGGGTGGAAGGAGTGGGTCAGTGGGCAGGACCCACCCAGCACCATATTTTATGGGGAGTATCGGAATAGTGGACTTGGATCCAACGTGGATAAAAGGGTTAAATGGTTGGGTTATAGACCCACACTTTCGGATGCTGATGCCGGGAAGTTCACCGTCGGGACCTTTCTCAACGGCCAGGATTGGTTGCCGGCCACCGATGTAAAATTTGATACATCTTTATGA 1731 52.8 MDSVKSFKGYGKVDELEQQAFRRKTRRRLIILVVSVILLICIVIGAAVGIVIHKRNSSSSSPKSTPPPTELAPAASLKTLCSVTQYPSSCQSSLENSNTTDLVFLFKLSLRVATDSLSKLADYASKLNSSTADPNLRAAIGVCQSVLEDAIETLNDTVSSMEVDRNGEKFLSPSRIQDLKTWLSTTITDQETCLDAVRDLNQTAVLEDLQTAMENSTEFTSNSLAIVTKILGVLSDFNIPIHRRLLEFPEWVSSGDRRLLQASNVTAHVTVSKDGTGNFATIKAAVAAVPKKSKERFVIYVKEGIYEENVILDKNKWNVMMFGDGRTKTIVSGSLNFVDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMYGCSFDAYQDTLYAHSNRQFYRNCEITGTIDFMFGNAAVVFQSCNIRPRQPLPNQFNTITAQGKKDINQNTGISIQKCSFSAYNDSLSALTYLGRPWKEFSTTVIMQSEIGGFLQPVGWKEWVSGQDPPSTIFYGEYRNSGLGSNVDKRVKWLGYRPTLSDADAGKFTVGTFLNGQDWLPATDVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46340802 46344017 + Sed0004119.1 Sed06g2286 718829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2286 576 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed06g2286 576 SUPERFAMILY Pectin lyase-like 265 572 IPR011050 -
Sed06g2286 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 230 IPR035513 -
Sed06g2286 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Sed06g2286 576 NCBIfam pectinesterase inhibitor domain 66 230 IPR006501 GO:0004857(InterPro)
Sed06g2286 576 Gene3D - 261 576 IPR012334 -
Sed06g2286 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Sed06g2286 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed06g2286 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Sed06g2286 576 FunFam Pectinesterase 262 576 - -
Sed06g2286 576 CDD PMEI-like_3 79 230 - -
Sed06g2286 576 FunFam Pectinesterase 73 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2286 Sed-Chr6:46340802 Sed08g2620 Sed-Chr8:38465075 2.60E-121 dispersed
Sed08g2055 Sed-Chr8:34823114 Sed06g2286 Sed-Chr6:46340802 2.80E-21 transposed
Sed04g1778 Sed-Chr4:32417976 Sed06g2286 Sed-Chr6:46340802 2.00E-110 wgd
Sed06g0037 Sed-Chr6:219585 Sed06g2286 Sed-Chr6:46340802 6.50E-250 wgd
Sed06g2286 Sed-Chr6:46340802 Sed09g1726 Sed-Chr9:40469150 4.50E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2286 - - - 0.0