Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2292 ATGATGCTTCATTCCATAGGAGCTGCTAGGCAGACTTGCAGCTTACTTGCTGTCACCTGCGGAAGCGTGCCTAAAGTAAAGTGCGAAGAGGATGTTGCTGAGGATAAGTTGAAATACCCCTTTCCGGTATTAGTTTCTTCGGGACGATTGGAGGTCCGAGTTCTGACGAATCCAAGTAAGGGTGAGTTTAGTAGAGTTGTAGAATCATGCCAACCGAGCTTCATCTACTTACAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTTTTGAAGATTCATGTGAACTATTCAATTCTGCATTACCAACCACTGTTTATTTAGAAATCCCGAATGGGGACAGAATAGCGAAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATTTATTGGAAGAACACATTTTCTTGTTATGCTGGAGCTCATTTTCGAAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGACTATACCCTTCCGGAGAATGCTGATGATATTAGGAGTGATATGGAGCCTCAGCTTATAGGGGAACCTCTAAAGATTAGCATAGAACCCCCCGAGATAGATGTAGGTGAAGACGAAGATGGTTCTTTAGAAGCCCTCCCTGCCATAAGTATACATGATAATAATGTGACTGCCAGATTTCTCATCTGTGGAGTTCCTTGCACACCAGATGCTTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACGTTGAAATCCGTGGGAGTAAACTTCAGGGGAAGTTCAGTGCTCCCCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACGATGCGATGTGATATTGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGACGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAACAGCCAATTAGTCCATGCCATGCATGATTGTGAGGATAACAAACATCGCATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACTGTATTGGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGAGATGTCATATCGGAGTTTAGTGGCACTTGGCATCGGGGGAGTTCAGGGTTTGCCCGTTGCTTCTTTTGTGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAGGATGAGAATGATCAACATTCAGATCAGTTTCTTTTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTTGAACCAAGCCAAGTAATAAGGAAAACTCTTTCACATGACACTCTTGCATATGCAAAGATTCCTTCCATTAGAAGAGTACCTGGAGAGGAGCCTGCACCAATGAATGGGTTGAAGGCACCCTTACTCCCAGCAAGGAAAAGATCAAAAGGAGCCACCATGAGGCCGATTCCACGCGCGCATAGGAATAAAATGACATCTTTTTCTGGATTGAATGAAGCAGATGGGAACAATGGAGGCCAACACAAGGCTAGTTTGCCTGTCATTACCCCATCAAAGCATGCAACTCTAGGATCAACTTCTGCAACACAAAGAAAATCGTTTTCCAGCTCATCTCAGTCTAAGCAGCTGCTGACTATTCCCTTAATTCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCCGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTAAGAGGACATTCGCGACATATTCCTCAAGGGGGAGTTGAGGAGTTCCCGGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTACAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTTTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGTGACCGGAGGCAAGGGCTCGGTGCATTCAAGGATTATGCCAAAACAGATGGGTTAGAATATGTTTGTCCACATTGTAGCATTACAAATTACAAGAAGAAAACACACAGAGTGGCAAACGGGTCTTCACAAGGAATATTGTATCCGCGAATATCTTGA 2355 44.16 MMLHSIGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPVLVSSGRLEVRVLTNPSKGEFSRVVESCQPSFIYLQGEQLENDEIGSLVWNGVDLSFEDSCELFNSALPTTVYLEIPNGDRIAKALHSKGIPYVIYWKNTFSCYAGAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSDYTLPENADDIRSDMEPQLIGEPLKISIEPPEIDVGEDEDGSLEALPAISIHDNNVTARFLICGVPCTPDACLLRSLEDGLNALLNVEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEDNKHRMHEPRKSASVACGATVLEVSMKVPAWASQVLRQLAPEMSYRSLVALGIGGVQGLPVASFVKEDAERLLFFCSKDENDQHSDQFLLSVLPNWFKPPTPSRKRVEPSQVIRKTLSHDTLAYAKIPSIRRVPGEEPAPMNGLKAPLLPARKRSKGATMRPIPRAHRNKMTSFSGLNEADGNNGGQHKASLPVITPSKHATLGSTSATQRKSFSSSSQSKQLLTIPLIPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRHIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKTHRVANGSSQGILYPRIS 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46362607 46371299 + Sed0001277.2 Sed06g2292 718835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2292 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 768 IPR013083 -
Sed06g2292 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677(InterPro)
Sed06g2292 784 MobiDBLite consensus disorder prediction 550 571 - -
Sed06g2292 784 SMART ARID_2 594 697 - -
Sed06g2292 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 Gene3D - 594 697 IPR036431 GO:0003677(InterPro)
Sed06g2292 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Sed06g2292 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Sed06g2292 784 CDD ARID 599 697 - -
Sed06g2292 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 SMART bright_3 598 702 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 CDD PHD_ARID4_like 707 758 - -
Sed06g2292 784 MobiDBLite consensus disorder prediction 548 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0034 Sed-Chr6:194837 Sed06g2292 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2292 Sed-Chr6:46362607 Sed06g2295 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2291 Sed-Chr6:46362607 Sed06g2292 Sed-Chr6:46362607 0.00E+00 tandem
Sed06g2292 Sed-Chr6:46362607 Sed06g2293 Sed-Chr6:46362607 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38951 PF01388 ARID 2.60E-14 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2292 - - - 0.0