Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2292 ATGATGCTTCATTCCATAGGAGCTGCTAGGCAGACTTGCAGCTTACTTGCTGTCACCTGCGGAAGCGTGCCTAAAGTAAAGTGCGAAGAGGATGTTGCTGAGGATAAGTTGAAATACCCCTTTCCGGTATTAGTTTCTTCGGGACGATTGGAGGTCCGAGTTCTGACGAATCCAAGTAAGGGTGAGTTTAGTAGAGTTGTAGAATCATGCCAACCGAGCTTCATCTACTTACAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTTTTGAAGATTCATGTGAACTATTCAATTCTGCATTACCAACCACTGTTTATTTAGAAATCCCGAATGGGGACAGAATAGCGAAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATTTATTGGAAGAACACATTTTCTTGTTATGCTGGAGCTCATTTTCGAAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGACTATACCCTTCCGGAGAATGCTGATGATATTAGGAGTGATATGGAGCCTCAGCTTATAGGGGAACCTCTAAAGATTAGCATAGAACCCCCCGAGATAGATGTAGGTGAAGACGAAGATGGTTCTTTAGAAGCCCTCCCTGCCATAAGTATACATGATAATAATGTGACTGCCAGATTTCTCATCTGTGGAGTTCCTTGCACACCAGATGCTTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACGTTGAAATCCGTGGGAGTAAACTTCAGGGGAAGTTCAGTGCTCCCCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACGATGCGATGTGATATTGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGACGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAACAGCCAATTAGTCCATGCCATGCATGATTGTGAGGATAACAAACATCGCATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACTGTATTGGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGAGATGTCATATCGGAGTTTAGTGGCACTTGGCATCGGGGGAGTTCAGGGTTTGCCCGTTGCTTCTTTTGTGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAGGATGAGAATGATCAACATTCAGATCAGTTTCTTTTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTTGAACCAAGCCAAGTAATAAGGAAAACTCTTTCACATGACACTCTTGCATATGCAAAGATTCCTTCCATTAGAAGAGTACCTGGAGAGGAGCCTGCACCAATGAATGGGTTGAAGGCACCCTTACTCCCAGCAAGGAAAAGATCAAAAGGAGCCACCATGAGGCCGATTCCACGCGCGCATAGGAATAAAATGACATCTTTTTCTGGATTGAATGAAGCAGATGGGAACAATGGAGGCCAACACAAGGCTAGTTTGCCTGTCATTACCCCATCAAAGCATGCAACTCTAGGATCAACTTCTGCAACACAAAGAAAATCGTTTTCCAGCTCATCTCAGTCTAAGCAGCTGCTGACTATTCCCTTAATTCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCCGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTAAGAGGACATTCGCGACATATTCCTCAAGGGGGAGTTGAGGAGTTCCCGGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTACAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTTTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGTGACCGGAGGCAAGGGCTCGGTGCATTCAAGGATTATGCCAAAACAGATGGGTTAGAATATGTTTGTCCACATTGTAGCATTACAAATTACAAGAAGAAAACACACAGAGTGGCAAACGGGTCTTCACAAGGAATATTGTATCCGCGAATATCTTGA 2355 44.16 MMLHSIGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPVLVSSGRLEVRVLTNPSKGEFSRVVESCQPSFIYLQGEQLENDEIGSLVWNGVDLSFEDSCELFNSALPTTVYLEIPNGDRIAKALHSKGIPYVIYWKNTFSCYAGAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSDYTLPENADDIRSDMEPQLIGEPLKISIEPPEIDVGEDEDGSLEALPAISIHDNNVTARFLICGVPCTPDACLLRSLEDGLNALLNVEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEDNKHRMHEPRKSASVACGATVLEVSMKVPAWASQVLRQLAPEMSYRSLVALGIGGVQGLPVASFVKEDAERLLFFCSKDENDQHSDQFLLSVLPNWFKPPTPSRKRVEPSQVIRKTLSHDTLAYAKIPSIRRVPGEEPAPMNGLKAPLLPARKRSKGATMRPIPRAHRNKMTSFSGLNEADGNNGGQHKASLPVITPSKHATLGSTSATQRKSFSSSSQSKQLLTIPLIPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRHIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKTHRVANGSSQGILYPRIS 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46362607 46371299 + Sed0001277.2 Sed06g2292 718835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2292 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 768 IPR013083 -
Sed06g2292 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677(InterPro)
Sed06g2292 784 MobiDBLite consensus disorder prediction 550 571 - -
Sed06g2292 784 SMART ARID_2 594 697 - -
Sed06g2292 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 Gene3D - 594 697 IPR036431 GO:0003677(InterPro)
Sed06g2292 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Sed06g2292 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Sed06g2292 784 CDD ARID 599 697 - -
Sed06g2292 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 SMART bright_3 598 702 IPR001606 GO:0003677(InterPro)
Sed06g2292 784 CDD PHD_ARID4_like 707 758 - -
Sed06g2292 784 MobiDBLite consensus disorder prediction 548 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2292 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0034 Sed-Chr6:194837 Sed06g2292 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2292 Sed-Chr6:46362607 Sed06g2295 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2291 Sed-Chr6:46362607 Sed06g2292 Sed-Chr6:46362607 0.00E+00 tandem
Sed06g2292 Sed-Chr6:46362607 Sed06g2293 Sed-Chr6:46362607 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38951 PF01388 ARID 2.60E-14 CL0123 Sed TR