Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2293 ATGATGCTTCATTCCATAGGAGCTGCTAGGCAGACTTGCAGCTTACTTGCTGTCACCTGCGGAAGCGTGCCTAAAGTAAAGTGCGAAGAGGATGTTGCTGAGGATAAGTTGAAATACCCCTTTCCGGTATTAGTTTCTTCGGGACGATTGGAGGTCCGAGTTCTGACGAATCCAAGTAAGGGTGAGTTTAGTAGAGTTGTAGAATCATGCCAACCGAGCTTCATCTACTTACAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTTTTGAAGATTCATGTGAACTATTCAATTCTGCATTACCAACCACTGTTTATTTAGAAATCCCGAATGGGGACAGAATAGCGAAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATTTATTGGAAGAACACATTTTCTTGTTATGCTGGAGCTCATTTTCGAAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGACTATACCCTTCCGGAGAATGCTGATGATATTAGGAGTGATATGGAGCCTCAGCTTATAGGGGAACCTCTAAAGATTAGCATAGAACCCCCCGAGATAGATGTAGGTGAAGACGAAGATGGTTCTTTAGAAGCCCTCCCTGCCATAAGTATACATGATAATAATGTGACTGCCAGATTTCTCATCTGTGGAGTTCCTTGCACACCAGTAAGCAGTTTTCAGGATGCTTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACGTTGAAATCCGTGGGAGTAAACTTCAGGGGAAGTTCAGTGCTCCCCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACGATGCGATGTGATATTGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGACGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAACAGCCAATTAGTCCATGCCATGCATGATTGTGAGGATAACAAACATCGCATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACTGTATTGGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGAGATGTCATATCGGAGTTTAGTGGCACTTGGCATCGGGGGAGTTCAGGGTTTGCCCGTTGCTTCTTTTGTGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAGGATGAGAATGATCAACATTCAGATCAGTTTCTTTTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTTGAACCAAGCCAAGTAATAAGGAAAACTCTTTCACATGACACTCTTGCATATGCAAAGATTCCTTCCATTAGAAGAGTACCTGGAGAGGAGCCTGCACCAATGAATGGGTTGAAGGCACCCTTACTCCCAGCAAGGAAAAGATCAAAAGGAGCCACCATGAGGCCGATTCCACGCGCGCATAGGAATAAAATGACATCTTTTTCTGGATTGAATGAAGCAGATGGGAACAATGGAGGCCAACACAAGGCTAGTTTGCCTGTCATTACCCCATCAAAGCATGCAACTCTAGGATCAACTTCTGCAACACAAAGAAAATCGTTTTCCAGCTCATCTCAGTCTAAGCAGCTGCTGACTATTCCCTTAATTCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCCGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTAAGAGGACATTCGCGACATATTCCTCAAGGGGGAGTTGAGGAGTTCCCGGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTACAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTTTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGTGACCGGAGGCAAGGGCTCGGTGCATTCAAGGATTATGCCAAAACAGATGGGTTAGAATATGTTTGTCCACATTGTAGCATTACAAATTACAAGAAGAAAACACACAGAGTGGCAAACGGGTCTTCACAAGGAATATTGTATCCGCGAATATCTTGA 2370 44.14 MMLHSIGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPVLVSSGRLEVRVLTNPSKGEFSRVVESCQPSFIYLQGEQLENDEIGSLVWNGVDLSFEDSCELFNSALPTTVYLEIPNGDRIAKALHSKGIPYVIYWKNTFSCYAGAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSDYTLPENADDIRSDMEPQLIGEPLKISIEPPEIDVGEDEDGSLEALPAISIHDNNVTARFLICGVPCTPVSSFQDACLLRSLEDGLNALLNVEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEDNKHRMHEPRKSASVACGATVLEVSMKVPAWASQVLRQLAPEMSYRSLVALGIGGVQGLPVASFVKEDAERLLFFCSKDENDQHSDQFLLSVLPNWFKPPTPSRKRVEPSQVIRKTLSHDTLAYAKIPSIRRVPGEEPAPMNGLKAPLLPARKRSKGATMRPIPRAHRNKMTSFSGLNEADGNNGGQHKASLPVITPSKHATLGSTSATQRKSFSSSSQSKQLLTIPLIPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRHIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKTHRVANGSSQGILYPRIS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46362607 46371299 + Sed0001277.3 Sed06g2293 718836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2293 789 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 783 IPR042293 -
Sed06g2293 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 773 IPR013083 -
Sed06g2293 789 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677(InterPro)
Sed06g2293 789 CDD ARID 604 702 - -
Sed06g2293 789 Gene3D - 599 702 IPR036431 GO:0003677(InterPro)
Sed06g2293 789 SMART ARID_2 599 702 - -
Sed06g2293 789 CDD PHD_ARID4_like 712 763 - -
Sed06g2293 789 MobiDBLite consensus disorder prediction 553 576 - -
Sed06g2293 789 MobiDBLite consensus disorder prediction 555 576 - -
Sed06g2293 789 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677(InterPro)
Sed06g2293 789 SMART bright_3 603 707 IPR001606 GO:0003677(InterPro)
Sed06g2293 789 SUPERFAMILY ARID-like 602 717 IPR036431 GO:0003677(InterPro)
Sed06g2293 789 SUPERFAMILY FYVE/PHD zinc finger 698 766 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2293 Sed-Chr6:46362607 Sed06g2295 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2292 Sed-Chr6:46362607 Sed06g2293 Sed-Chr6:46362607 0.00E+00 tandem
Sed06g2293 Sed-Chr6:46362607 Sed06g2294 Sed-Chr6:46362607 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38952 PF01388 ARID 2.60E-14 CL0123 Sed TR