Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2294 ATGATGCTTCATTCCATAGGAGCTGCTAGGCAGACTTGCAGCTTACTTGCTGTCACCTGCGGAAGCGTGCCTAAAGTAAAGTGCGAAGAGGATGTTGCTGAGGATAAGTTGAAATACCCCTTTCCGGTATTAGTTTCTTCGGGACGATTGGAGGTCCGAGTTCTGACGAATCCAAGTAAGGGTGAGTTTAGTAGAGTTGTAGAATCATGCCAACCGAGCTTCATCTACTTACAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTTTTGAAGATTCATGTGAACTATTCAATTCTGCATTACCAACCACTGTTTATTTAGAAATCCCGAATGGGGACAGAATAGCGAAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATTTATTGGAAGAACACATTTTCTTGTTATGCTGGAGCTCATTTTCGAAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGACTATACCCTTCCGGAGAATGCTGATGATATTAGGAGTGATATGGAGCCTCAGCTTATAGGGGAACCTCTAAAGATTAGCATAGAACCCCCCGAGATAGATGTAGGTGAAGACGAAGATGGTTCTTTAGAAGCCCTCCCTGCCATAAGTATACATGATAATAATGTGACTGCCAGATTTCTCATCTGTGGAGTTCCTTGCACACCAGTAAGCAGTTTTCAGGATGCTTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACGTTGAAATCCGTGGGAGTAAACTTCAGGGGAAGTTCAGTGCTCCCCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACGATGCGATGTGATATTGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGACGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAACAGCCAATTAGTCCATGCCATGCATGATTGTGAGGATAACAAACATCGCATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACTGTATTGGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGAGATGTCATATCGGAGTTTAGTGGCACTTGGCATCGGGGGAGTTCAGGGTTTGCCCGTTGCTTCTTTTGTGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAGGATGAGAATGATCAACATTCAGATCAGTTTCTTTTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTTGAACCAAGCCAAGTAATAAGGAAAACTCTTTCACATGACACTCTTGCATATGCAAAGATTCCTTCCATTAGAAGAGTACCTGGAGAGGAGCCTGCACCAATGAATGGGTTGAAGGCACCCTTACTCCCAGCAAGGAAAAGATCAAAAGGAGCCACCATGAGGCCGATTCCACGCGCGCATAGGAATAAAATGACATCTTTTTCTGGATTGAATGAAGCAGATGGGAACAATGGAGGCCAACACAAGGCTAGTTTGCCTGTCATTACCCCATCAAAGCATGCAACTCTAGGATCAACTTCTGCAACACAAAGAAAATCGTTTTCCAGCTCATCTCAGTCTAAGCAGCTGCTGACTATTCCCTTAATTCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCCGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTAAGAGGACATTCGCGACATATTCCTCAAGGGGGAGTTGAGGAGTTCCCGGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTACAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTTTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGTGACCGGAGGCAAGGGCTCGGTGCATTCAAGGATTATGCCAAAACAGATGGGTTAGAATATGTTTGTCCACATTGTAGCATTACAAATTACAAGAAGAAAACACACAGAGTGGCAAACGGGTCTTCACAAGGAATATTGTATCCGCGAATATCTTGA 2370 44.14 MMLHSIGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPVLVSSGRLEVRVLTNPSKGEFSRVVESCQPSFIYLQGEQLENDEIGSLVWNGVDLSFEDSCELFNSALPTTVYLEIPNGDRIAKALHSKGIPYVIYWKNTFSCYAGAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSDYTLPENADDIRSDMEPQLIGEPLKISIEPPEIDVGEDEDGSLEALPAISIHDNNVTARFLICGVPCTPVSSFQDACLLRSLEDGLNALLNVEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEDNKHRMHEPRKSASVACGATVLEVSMKVPAWASQVLRQLAPEMSYRSLVALGIGGVQGLPVASFVKEDAERLLFFCSKDENDQHSDQFLLSVLPNWFKPPTPSRKRVEPSQVIRKTLSHDTLAYAKIPSIRRVPGEEPAPMNGLKAPLLPARKRSKGATMRPIPRAHRNKMTSFSGLNEADGNNGGQHKASLPVITPSKHATLGSTSATQRKSFSSSSQSKQLLTIPLIPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRHIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITNYKKKTHRVANGSSQGILYPRIS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46362607 46371299 + Sed0001277.4 Sed06g2294 718837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2294 789 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 783 IPR042293 -
Sed06g2294 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 773 IPR013083 -
Sed06g2294 789 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677(InterPro)
Sed06g2294 789 CDD ARID 604 702 - -
Sed06g2294 789 Gene3D - 599 702 IPR036431 GO:0003677(InterPro)
Sed06g2294 789 SMART ARID_2 599 702 - -
Sed06g2294 789 CDD PHD_ARID4_like 712 763 - -
Sed06g2294 789 MobiDBLite consensus disorder prediction 553 576 - -
Sed06g2294 789 MobiDBLite consensus disorder prediction 555 576 - -
Sed06g2294 789 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677(InterPro)
Sed06g2294 789 SMART bright_3 603 707 IPR001606 GO:0003677(InterPro)
Sed06g2294 789 SUPERFAMILY ARID-like 602 717 IPR036431 GO:0003677(InterPro)
Sed06g2294 789 SUPERFAMILY FYVE/PHD zinc finger 698 766 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2294 Sed-Chr6:46362607 Sed06g2296 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g2293 Sed-Chr6:46362607 Sed06g2294 Sed-Chr6:46362607 0.00E+00 tandem
Sed06g2294 Sed-Chr6:46362607 Sed06g2295 Sed-Chr6:46362607 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38953 PF01388 ARID 2.60E-14 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2294 - - - 0.0