Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2306 ATGGAGCCGTCGTCTCATGGAGTTCCAGAAACGGCGGAGCAGATTATTCTACGCTGGGATTCTGCCGCGGCGGAGGAAGTGAAGGATACCATGATTTTTGACTCCGACAGGGAAGAGATCGACCGGTACTTGCAGGCTGTCGACGAAATCCAGAGCTCCATGTCGTCGGCTTCCTTATCGGACGATCAGAGCAAAGCCGATTCCACTATGCAGATCGCCATGGCCAGGCTCGAGGACGAGTTCCGTCACATTCTCTCCACTCACACCACTTCGATCGAGCTCGACTCGCTTGCTGATCCCAGCCCTTCCTCTCGTTCCATGTCCAGCAGCGGCAGTGTTGTATTGGAGGATGAGAACGACGAGGAACAGGATTCGCAGGAACTTCAGCTTGATTTAAGTGGTATTCCAAGTTTTCAGTCAAGTGGGCGATCGAGCTACCGGGCGACGAGCAGTATTCGTGAGATTGATCTGTTCCCTTCGGATGCGATTATCAATCTACGAAGTATTGCTGAGCGGATGGTATCGGCGGGTTACCTGCGGGAGTGCATCCAAGTTTATGGAAGTGTGCGAAAGTCCAGTTTCGACACCAGCTTCAGACGCTTCGGGATGGAGAAGCTGGGCATTGGAGATATCCAGAGGTTGGATGGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCGGCCAAGGTATGTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTCTATGGCCTAGGGACTGCCATAGACGATACTTGTTTCATGGAGACTGTGAAAGGCCCCGTCACTCACTTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCTGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCTTTGACGGATTTGACACCTGACATTGATGTGATCTTCGAGTCCAAATCTACAGAATATATTCGGATTCAGACGGCGGAGATATTGTCGCGGCTGGCGGAGGCGGCCAGAGGGACTATATCGGAGTTTGAAAACGCGGTGCTGCGAGATCCGTTGCAGCATCCAGTGCCCGGCGGGACGATTCATCCGCTCACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGAGGAGCTTATTGTGTCCAAACCATCCACGGACTTGAGATACTCGGCCGATGACACAACCCCCCTTGATATGGACTTTGCGGAGCTAGAGGGCAAAACGCCCTTAGCGCTCCATCTGATATGGAGCATTGTGATTCTGCACTTCAATTTGGAGGGTAAGTCCAGGCACTACAAAGACCCATCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTGAGAAGATAAAATCATCCCCAGATTTGCAAGAAATGATTGGAGACGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACTTGTGTAAGTGTGTTGTGTTGCCTGCGTAACGAAGGGTTGAATGTGGGCAGGAGCTTATCTTCCGCCCCCTCAAAGAGCGCTATTCGAGAGAGATTCAAGACTTTCAACGCCGTGTTTGAAGAGGTTCACAGGACACAATCGGCATGGTCGATACCAGATTCTGATCTGAGGGAGGAGCTTCGCATCCACATAACTGATCAGCTGGTCCCAGCTTACAGGTGGTTTCTTGGCTGCCATCGCCAACTCATAGAGAGTGAAAGGCACCCAGAAAATTACATCAAGTATTCGGTCGAGGAACTGGAAGACGCCATCTCGGATTTCTTTGAGGGTGGCTCAGTAACCCTCAACTTTAGAAGGAAATCTCACTGA 1839 50.14 MEPSSHGVPETAEQIILRWDSAAAEEVKDTMIFDSDREEIDRYLQAVDEIQSSMSSASLSDDQSKADSTMQIAMARLEDEFRHILSTHTTSIELDSLADPSPSSRSMSSSGSVVLEDENDEEQDSQELQLDLSGIPSFQSSGRSSYRATSSIREIDLFPSDAIINLRSIAERMVSAGYLRECIQVYGSVRKSSFDTSFRRFGMEKLGIGDIQRLDGNELETKIRRWIRAAKVCIRTLFSSEKKLCEQIFYGLGTAIDDTCFMETVKGPVTHLFNFAEAISISRRSLEKLFKILDLHDALTDLTPDIDVIFESKSTEYIRIQTAEILSRLAEAARGTISEFENAVLRDPLQHPVPGGTIHPLTRYVMNYVSLISDYKVTLEELIVSKPSTDLRYSADDTTPLDMDFAELEGKTPLALHLIWSIVILHFNLEGKSRHYKDPSLAHLFIMNNVHYIVEKIKSSPDLQEMIGDVYLKRMTGKYRQAATNYERTTCVSVLCCLRNEGLNVGRSLSSAPSKSAIRERFKTFNAVFEEVHRTQSAWSIPDSDLREELRIHITDQLVPAYRWFLGCHRQLIESERHPENYIKYSVEELEDAISDFFEGGSVTLNFRRKSH 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46432933 46438284 + Sed0003184.1 Sed06g2306 718849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2306 612 MobiDBLite consensus disorder prediction 93 114 - -
Sed06g2306 612 Pfam Exo70 exocyst complex subunit C-terminal 225 596 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed06g2306 612 MobiDBLite consensus disorder prediction 128 143 - -
Sed06g2306 612 MobiDBLite consensus disorder prediction 93 143 - -
Sed06g2306 612 Pfam Exocyst complex component Exo70 N-terminal 10 86 - -
Sed06g2306 612 SUPERFAMILY Cullin repeat-like 12 599 IPR016159 -
Sed06g2306 612 PANTHER EXOCYST COMPLEX PROTEIN EXO70 10 600 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed06g2306 612 Gene3D Exocyst complex component Exo70 15 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2306 Sed-Chr6:46432933 Sed12g2505 Sed-Chr12:34551622 1.30E-107 dispersed
Sed06g0018 Sed-Chr6:141779 Sed06g2306 Sed-Chr6:46432933 6.10E-286 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2306 K07195 - csv:101204229 944.11