Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2306 | ATGGAGCCGTCGTCTCATGGAGTTCCAGAAACGGCGGAGCAGATTATTCTACGCTGGGATTCTGCCGCGGCGGAGGAAGTGAAGGATACCATGATTTTTGACTCCGACAGGGAAGAGATCGACCGGTACTTGCAGGCTGTCGACGAAATCCAGAGCTCCATGTCGTCGGCTTCCTTATCGGACGATCAGAGCAAAGCCGATTCCACTATGCAGATCGCCATGGCCAGGCTCGAGGACGAGTTCCGTCACATTCTCTCCACTCACACCACTTCGATCGAGCTCGACTCGCTTGCTGATCCCAGCCCTTCCTCTCGTTCCATGTCCAGCAGCGGCAGTGTTGTATTGGAGGATGAGAACGACGAGGAACAGGATTCGCAGGAACTTCAGCTTGATTTAAGTGGTATTCCAAGTTTTCAGTCAAGTGGGCGATCGAGCTACCGGGCGACGAGCAGTATTCGTGAGATTGATCTGTTCCCTTCGGATGCGATTATCAATCTACGAAGTATTGCTGAGCGGATGGTATCGGCGGGTTACCTGCGGGAGTGCATCCAAGTTTATGGAAGTGTGCGAAAGTCCAGTTTCGACACCAGCTTCAGACGCTTCGGGATGGAGAAGCTGGGCATTGGAGATATCCAGAGGTTGGATGGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCGGCCAAGGTATGTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTCTATGGCCTAGGGACTGCCATAGACGATACTTGTTTCATGGAGACTGTGAAAGGCCCCGTCACTCACTTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCTGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCTTTGACGGATTTGACACCTGACATTGATGTGATCTTCGAGTCCAAATCTACAGAATATATTCGGATTCAGACGGCGGAGATATTGTCGCGGCTGGCGGAGGCGGCCAGAGGGACTATATCGGAGTTTGAAAACGCGGTGCTGCGAGATCCGTTGCAGCATCCAGTGCCCGGCGGGACGATTCATCCGCTCACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGAGGAGCTTATTGTGTCCAAACCATCCACGGACTTGAGATACTCGGCCGATGACACAACCCCCCTTGATATGGACTTTGCGGAGCTAGAGGGCAAAACGCCCTTAGCGCTCCATCTGATATGGAGCATTGTGATTCTGCACTTCAATTTGGAGGGTAAGTCCAGGCACTACAAAGACCCATCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTGAGAAGATAAAATCATCCCCAGATTTGCAAGAAATGATTGGAGACGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACTTGTGTAAGTGTGTTGTGTTGCCTGCGTAACGAAGGGTTGAATGTGGGCAGGAGCTTATCTTCCGCCCCCTCAAAGAGCGCTATTCGAGAGAGATTCAAGACTTTCAACGCCGTGTTTGAAGAGGTTCACAGGACACAATCGGCATGGTCGATACCAGATTCTGATCTGAGGGAGGAGCTTCGCATCCACATAACTGATCAGCTGGTCCCAGCTTACAGGTGGTTTCTTGGCTGCCATCGCCAACTCATAGAGAGTGAAAGGCACCCAGAAAATTACATCAAGTATTCGGTCGAGGAACTGGAAGACGCCATCTCGGATTTCTTTGAGGGTGGCTCAGTAACCCTCAACTTTAGAAGGAAATCTCACTGA | 1839 | 50.14 | MEPSSHGVPETAEQIILRWDSAAAEEVKDTMIFDSDREEIDRYLQAVDEIQSSMSSASLSDDQSKADSTMQIAMARLEDEFRHILSTHTTSIELDSLADPSPSSRSMSSSGSVVLEDENDEEQDSQELQLDLSGIPSFQSSGRSSYRATSSIREIDLFPSDAIINLRSIAERMVSAGYLRECIQVYGSVRKSSFDTSFRRFGMEKLGIGDIQRLDGNELETKIRRWIRAAKVCIRTLFSSEKKLCEQIFYGLGTAIDDTCFMETVKGPVTHLFNFAEAISISRRSLEKLFKILDLHDALTDLTPDIDVIFESKSTEYIRIQTAEILSRLAEAARGTISEFENAVLRDPLQHPVPGGTIHPLTRYVMNYVSLISDYKVTLEELIVSKPSTDLRYSADDTTPLDMDFAELEGKTPLALHLIWSIVILHFNLEGKSRHYKDPSLAHLFIMNNVHYIVEKIKSSPDLQEMIGDVYLKRMTGKYRQAATNYERTTCVSVLCCLRNEGLNVGRSLSSAPSKSAIRERFKTFNAVFEEVHRTQSAWSIPDSDLREELRIHITDQLVPAYRWFLGCHRQLIESERHPENYIKYSVEELEDAISDFFEGGSVTLNFRRKSH | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 46432933 | 46438284 | + | Sed0003184.1 | Sed06g2306 | 718849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2306 | 612 | MobiDBLite | consensus disorder prediction | 93 | 114 | - | - | |
Sed06g2306 | 612 | Pfam | Exo70 exocyst complex subunit C-terminal | 225 | 596 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
Sed06g2306 | 612 | MobiDBLite | consensus disorder prediction | 128 | 143 | - | - | |
Sed06g2306 | 612 | MobiDBLite | consensus disorder prediction | 93 | 143 | - | - | |
Sed06g2306 | 612 | Pfam | Exocyst complex component Exo70 N-terminal | 10 | 86 | - | - | |
Sed06g2306 | 612 | SUPERFAMILY | Cullin repeat-like | 12 | 599 | IPR016159 | - | |
Sed06g2306 | 612 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 10 | 600 | IPR004140 | GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER) | |
Sed06g2306 | 612 | Gene3D | Exocyst complex component Exo70 | 15 | 606 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2306 | Sed-Chr6:46432933 | Sed12g2505 | Sed-Chr12:34551622 | 1.30E-107 | dispersed | |
Sed06g0018 | Sed-Chr6:141779 | Sed06g2306 | Sed-Chr6:46432933 | 6.10E-286 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2306 | K07195 | - | csv:101204229 | 944.11 |