Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2321 ATGCTAACGGGTGTGCGCGTGGTGGGGCATATGCGCGCACCAGCCCCAACCATCATGTGTGCCGCCTTCCTAGGCCTCTCCCTCTCCCTCTCCCTCTCCCTTTGCCTTTCGGTCGCCTTGTCGGCTTCCGACGTTGAAACTCTCCTCCAATTCAAGCGCTCTTTGACCTCCTCCGCAGCCCTTCACAACTGGGATCCCTCCGTTCCTCCTTGCGACAACCACAAGCCCAATTGGGCGGGTGTGCTTTGTTTGAATGGCTACATTAGGGGTTTGCGGCTTGAGAGTATGGGGCTTAATGGCGTGGTTGATATGAACCCGCTCCTTTCGTTGACTCATTTGCGCACTCTTAGCTTCATGAACAACACATTGGTTGGCCCTTGGCCTCCTTTCATGAGCAAACTAGGAAATCTACGCTCGGTTTATCTCTCTTATAACCATTTTTCGGGAGAAATCCCAGATGATGCCTTTACCAGTATGAAATTTTTGAAGAAAGTGTTTTTGACGAATAATGAATTCAACGGCCAAATTCCCTCATCTCTGGCTTCGCTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTTGCAGGCCAACTCCCCCACCTTGAAATGGATACTTTGAAGAAACTTAATGTTTCCAACAATGTCTTGGAGGGCCCCATACCCAGTAGCTTAAGACATATGGATCCTACTGGTTTTTCAGGTAACAGTGATCTATGCGGAGATCCTCTTCCGGCATGCGAGAATCCCAAGTTGTTATCGTCGGGGCTGGTGAAAATAGCGGTGATAGTGATAGTTTTGGGGATAACATTAGCAGTGATAGCTGCATGTTTCATCCTATTGAATTTGAGGAAGCAGTCAGCGTTGCGACAGGGGAATAATGCAGGAGACATAATTGAAGAGGAGAACAAGTACACGAGTAAGCAAACGACGGGTGGGGGGGATATGTCGTCATCAGCGCCAGTACAGGCTTCGAAGAGGGGGGGCGAGCATGGCAAACTGTTGTTCGTGAGGGACGACAGAGAGAAGTTTGACTTACAGGACCTGCTCAGAGCGTCCGCCGAAATATTGGGGAGTGGTTCATTCGGGTCTTCATACAAAGCAACTATACTTTGCAATGCAGTGGTGGTGAAGAGATACAAGCATATGAACAACGTGGGAAGAGAGGAGTTCCATGAATACATGAGAAGGCTGGGCAGGTTGACGCATCCTAATCTACTGCCTTTGGTTGCCTATTATTACAGGAAGGAAGAGAAGTTGTTGATATCCGACTTTGTAGATAACGGGAGTTTGGCAAGCCATTTGCATGGGAACCACAACTTGGAGGAGCCAGGGTTAGATTGGAGCACCCGGTTGAAGATCATTAGAGGCATAGCAAGGGGGTTGTGTTACCTCTACACCTCCCTGCCCAACATAGCCGCGCCGCATGGGCACCTCAAATCTTCAAATGTGCTGCTGGACGACTCCTTGGACCCTCTGCTTACGGATTACGGCCTGATCCCAGTTGCTAACCTGGAGCACGCCCACACACTGATGATGGCCTACAAATCACCCGAGTATGCGCACATGGGCAACATAACCAAGAAGACCGACGTGTGGAGCTTTGGAATTGTGATACTCGAGATGCTGACCGGTAAGTTCCCAGAAAACTACCTCACCCGAAATCATGACGCCAAAGCAGACCTTGCCACTTGGGTCAACAACATGATCAAGGAAAAGAAGACCACGCAGCTGTTCGACGAAGAACTAGGGACAACCAGGGATACCAACAAAGGCCAGTTGTTGAAGATGCTCAAGATTGGATTGAGTTGTTGTGAAGAAGATGTGGATAGAAGATTGGAGTTGAATGAAATACTAACCCAAATTGAAGAATTGAACGAGGCACACTTGTTGAGTAGTACTGATGATGGGGATAGCTTCTCCCCTTCTCAAATTCCTGTTTGA 1947 48.64 MLTGVRVVGHMRAPAPTIMCAAFLGLSLSLSLSLCLSVALSASDVETLLQFKRSLTSSAALHNWDPSVPPCDNHKPNWAGVLCLNGYIRGLRLESMGLNGVVDMNPLLSLTHLRTLSFMNNTLVGPWPPFMSKLGNLRSVYLSYNHFSGEIPDDAFTSMKFLKKVFLTNNEFNGQIPSSLASLSRLMELRLDGNKFAGQLPHLEMDTLKKLNVSNNVLEGPIPSSLRHMDPTGFSGNSDLCGDPLPACENPKLLSSGLVKIAVIVIVLGITLAVIAACFILLNLRKQSALRQGNNAGDIIEEENKYTSKQTTGGGDMSSSAPVQASKRGGEHGKLLFVRDDREKFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREEFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEPGLDWSTRLKIIRGIARGLCYLYTSLPNIAAPHGHLKSSNVLLDDSLDPLLTDYGLIPVANLEHAHTLMMAYKSPEYAHMGNITKKTDVWSFGIVILEMLTGKFPENYLTRNHDAKADLATWVNNMIKEKKTTQLFDEELGTTRDTNKGQLLKMLKIGLSCCEEDVDRRLELNEILTQIEELNEAHLLSSTDDGDSFSPSQIPV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46562490 46564641 - Sed0020826.1 Sed06g2321 718864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2321 648 SUPERFAMILY Protein kinase-like (PK-like) 356 626 IPR011009 -
Sed06g2321 648 FunFam pollen receptor-like kinase 1 322 426 - -
Sed06g2321 648 MobiDBLite consensus disorder prediction 307 325 - -
Sed06g2321 648 Pfam Protein tyrosine and serine/threonine kinase 356 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2321 648 Gene3D Transferase(Phosphotransferase) domain 1 427 641 - -
Sed06g2321 648 SUPERFAMILY L domain-like 42 229 - -
Sed06g2321 648 MobiDBLite consensus disorder prediction 307 327 - -
Sed06g2321 648 Gene3D Ribonuclease Inhibitor 158 252 IPR032675 -
Sed06g2321 648 Pfam Leucine rich repeat 136 196 IPR001611 GO:0005515(InterPro)
Sed06g2321 648 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515(InterPro)
Sed06g2321 648 Gene3D Phosphorylase Kinase; domain 1 318 426 - -
Sed06g2321 648 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 104 200 - -
Sed06g2321 648 FunFam Pollen receptor-like kinase 1 427 637 - -
Sed06g2321 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 39 627 IPR046959 -
Sed06g2321 648 ProSiteProfiles Protein kinase domain profile. 352 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2321 648 Gene3D Ribonuclease Inhibitor 43 157 IPR032675 -
Sed06g2321 648 Pfam Leucine rich repeat N-terminal domain 42 83 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2321 Sed-Chr6:46562490 Sed08g0426 Sed-Chr8:2616673 3.30E-141 dispersed
Sed06g0004 Sed-Chr6:58549 Sed06g2321 Sed-Chr6:46562490 2.20E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79414 PF07714 PK_Tyr_Ser-Thr 1.70E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2321 K28077 - csv:101203276 952.97