Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g0043 | ATGGATTCCGAGGATGATCTTCATTACTCCACCGACGATGATTGCGATTTTTACAGCGGCGATATTGATATGGGCATGGGCTATTACAGCGATGACGACGCTCCTGACGCCGAGGACTTCGTCGACGACGATAACGATGATTACTTCGAGTCCCGTCGACACGAGCAAAATTATACAATACTAAATGAATTTGATATAAGACAACGCCAAGAGAATGACATTTCAAGAATTTCTTCAGTACTTTCTCTCTCACGTGTAGCGTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGACGAATGGTTTGCTGATGAAACTCGAGTAAGGAAGCAAGTTGGTTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGACTCCTATCCAAATAGTAGGATCAAGTCAGCCGTCTGTGGTCATCCTTTCTGTGCTACCTGCTGGGAAGGCTACATTAGCACATCAATCAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTCGATCAAGACATGGTTAATTCATTGGCCTCAAATGAAGACAAGGAGAAATATGCGCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACAAAGTGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAACGGCAACTATGATATATCTTGCCTCTGCACATACGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTAGAAAAATGGATTCTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAATTTTGTTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGTAACCGATATGAGGTAGCTAAGCAAGATGGCGTGTATGATGAGGCCGAGAAAAGAAGAGAAATGGCAAAAAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAACAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATCTACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATTTTACCTGCCAGAGCAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTATTCCAGTTCCTCAGTGCAGACGGTCCATCAAAAGAATTTAACGACTTCCGAACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAAAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCGAGCAGTGGCACGACGAGCTCAAAAAGCACAGCAGGAAGTAGCAAAGCAGGGAGAAGTGGGCGGGGTAAGGGAATACTGCGAACCAGCAGTTCGACCAGAAGCGGTGACAATGCCACTCATTGGTCATGTGATCACTGTACCTTTGTGAACACTAGATCTGCTACGACATGCCAGATGTGCCATCAACGCCATTGA | 1761 | 44.01 | MDSEDDLHYSTDDDCDFYSGDIDMGMGYYSDDDAPDAEDFVDDDNDDYFESRRHEQNYTILNEFDIRQRQENDISRISSVLSLSRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFDSYPNSRIKSAVCGHPFCATCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLASNEDKEKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDISCLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVHIEKLSDLHCTPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELFQFLSADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKAGRSGRGKGILRTSSSTRSGDNATHWSCDHCTFVNTRSATTCQMCHQRH | 586 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 697464 | 707302 | - | Sed0009610.1 | Sed07g0043 | 718907 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g0043 | 586 | MobiDBLite | consensus disorder prediction | 518 | 559 | - | - | |
| Sed07g0043 | 586 | ProSitePatterns | Zinc finger RanBP2-type signature. | 563 | 582 | IPR001876 | - | |
| Sed07g0043 | 586 | SUPERFAMILY | RING/U-box | 204 | 273 | - | - | |
| Sed07g0043 | 586 | SUPERFAMILY | RING/U-box | 285 | 333 | - | - | |
| Sed07g0043 | 586 | FunFam | RBR-type E3 ubiquitin transferase | 129 | 218 | - | - | |
| Sed07g0043 | 586 | CDD | Rcat_RBR_ARI7-like | 289 | 343 | - | - | |
| Sed07g0043 | 586 | SMART | zf_4 | 561 | 585 | IPR001876 | - | |
| Sed07g0043 | 586 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 555 | 586 | IPR001876 | - | |
| Sed07g0043 | 586 | CDD | BRcat_RBR_ANKIB1 | 211 | 275 | - | - | |
| Sed07g0043 | 586 | FunFam | RBR-type E3 ubiquitin transferase | 267 | 517 | - | - | |
| Sed07g0043 | 586 | Pfam | Ariadne domain | 353 | 514 | IPR045840 | - | |
| Sed07g0043 | 586 | SUPERFAMILY | Ran binding protein zinc finger-like | 559 | 584 | IPR036443 | - | |
| Sed07g0043 | 586 | SUPERFAMILY | RING/U-box | 132 | 213 | - | - | |
| Sed07g0043 | 586 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 179 | IPR001841 | - | |
| Sed07g0043 | 586 | Pfam | IBR domain | 288 | 328 | - | - | |
| Sed07g0043 | 586 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 68 | 107 | IPR048962 | - | |
| Sed07g0043 | 586 | Gene3D | - | 556 | 586 | - | - | |
| Sed07g0043 | 586 | Coils | Coil | 352 | 372 | - | - | |
| Sed07g0043 | 586 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 80 | 391 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
| Sed07g0043 | 586 | MobiDBLite | consensus disorder prediction | 518 | 538 | - | - | |
| Sed07g0043 | 586 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 217 | IPR013083 | - | |
| Sed07g0043 | 586 | ProSiteProfiles | TRIAD supradomain profile. | 131 | 344 | IPR044066 | - | |
| Sed07g0043 | 586 | Pfam | IBR domain, a half RING-finger domain | 204 | 266 | IPR002867 | GO:0008270(InterPro) | |
| Sed07g0043 | 586 | SMART | ibrneu5 | 204 | 266 | IPR002867 | GO:0008270(InterPro) | |
| Sed07g0043 | 586 | SMART | ibrneu5 | 270 | 340 | IPR002867 | GO:0008270(InterPro) | |
| Sed07g0043 | 586 | CDD | RING-HC_ARI6-like | 132 | 193 | - | - | |
| Sed07g0043 | 586 | Gene3D | - | 262 | 517 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1846 | Sed-Chr3:12283806 | Sed07g0043 | Sed-Chr7:697464 | 5.80E-257 | transposed | |
| Sed07g0043 | Sed-Chr7:697464 | Sed09g0427 | Sed-Chr9:4287179 | 0.00E+00 | wgd | |
| Sed07g0043 | Sed-Chr7:697464 | Sed09g0427 | Sed-Chr9:4287179 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g0043 | K11968 | - | csv:101223037 | 1099.35 |