Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0043 ATGGATTCCGAGGATGATCTTCATTACTCCACCGACGATGATTGCGATTTTTACAGCGGCGATATTGATATGGGCATGGGCTATTACAGCGATGACGACGCTCCTGACGCCGAGGACTTCGTCGACGACGATAACGATGATTACTTCGAGTCCCGTCGACACGAGCAAAATTATACAATACTAAATGAATTTGATATAAGACAACGCCAAGAGAATGACATTTCAAGAATTTCTTCAGTACTTTCTCTCTCACGTGTAGCGTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGACGAATGGTTTGCTGATGAAACTCGAGTAAGGAAGCAAGTTGGTTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGACTCCTATCCAAATAGTAGGATCAAGTCAGCCGTCTGTGGTCATCCTTTCTGTGCTACCTGCTGGGAAGGCTACATTAGCACATCAATCAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTCGATCAAGACATGGTTAATTCATTGGCCTCAAATGAAGACAAGGAGAAATATGCGCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACAAAGTGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAACGGCAACTATGATATATCTTGCCTCTGCACATACGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTAGAAAAATGGATTCTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAATTTTGTTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGTAACCGATATGAGGTAGCTAAGCAAGATGGCGTGTATGATGAGGCCGAGAAAAGAAGAGAAATGGCAAAAAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAACAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATCTACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATTTTACCTGCCAGAGCAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTATTCCAGTTCCTCAGTGCAGACGGTCCATCAAAAGAATTTAACGACTTCCGAACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAAAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCGAGCAGTGGCACGACGAGCTCAAAAAGCACAGCAGGAAGTAGCAAAGCAGGGAGAAGTGGGCGGGGTAAGGGAATACTGCGAACCAGCAGTTCGACCAGAAGCGGTGACAATGCCACTCATTGGTCATGTGATCACTGTACCTTTGTGAACACTAGATCTGCTACGACATGCCAGATGTGCCATCAACGCCATTGA 1761 44.01 MDSEDDLHYSTDDDCDFYSGDIDMGMGYYSDDDAPDAEDFVDDDNDDYFESRRHEQNYTILNEFDIRQRQENDISRISSVLSLSRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFDSYPNSRIKSAVCGHPFCATCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLASNEDKEKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDISCLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVHIEKLSDLHCTPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELFQFLSADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKAGRSGRGKGILRTSSSTRSGDNATHWSCDHCTFVNTRSATTCQMCHQRH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 697464 707302 - Sed0009610.1 Sed07g0043 718907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0043 586 MobiDBLite consensus disorder prediction 518 559 - -
Sed07g0043 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Sed07g0043 586 SUPERFAMILY RING/U-box 204 273 - -
Sed07g0043 586 SUPERFAMILY RING/U-box 285 333 - -
Sed07g0043 586 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Sed07g0043 586 CDD Rcat_RBR_ARI7-like 289 343 - -
Sed07g0043 586 SMART zf_4 561 585 IPR001876 -
Sed07g0043 586 ProSiteProfiles Zinc finger RanBP2 type profile. 555 586 IPR001876 -
Sed07g0043 586 CDD BRcat_RBR_ANKIB1 211 275 - -
Sed07g0043 586 FunFam RBR-type E3 ubiquitin transferase 267 517 - -
Sed07g0043 586 Pfam Ariadne domain 353 514 IPR045840 -
Sed07g0043 586 SUPERFAMILY Ran binding protein zinc finger-like 559 584 IPR036443 -
Sed07g0043 586 SUPERFAMILY RING/U-box 132 213 - -
Sed07g0043 586 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Sed07g0043 586 Pfam IBR domain 288 328 - -
Sed07g0043 586 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 68 107 IPR048962 -
Sed07g0043 586 Gene3D - 556 586 - -
Sed07g0043 586 Coils Coil 352 372 - -
Sed07g0043 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 80 391 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed07g0043 586 MobiDBLite consensus disorder prediction 518 538 - -
Sed07g0043 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Sed07g0043 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Sed07g0043 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 GO:0008270(InterPro)
Sed07g0043 586 SMART ibrneu5 204 266 IPR002867 GO:0008270(InterPro)
Sed07g0043 586 SMART ibrneu5 270 340 IPR002867 GO:0008270(InterPro)
Sed07g0043 586 CDD RING-HC_ARI6-like 132 193 - -
Sed07g0043 586 Gene3D - 262 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0043 K11968 - - csv:101223037 1099.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1846 Sed-Chr3:12283806 Sed07g0043 Sed-Chr7:697464 5.80E-257 transposed
Sed07g0043 Sed-Chr7:697464 Sed09g0427 Sed-Chr9:4287179 0.00E+00 wgd
Sed07g0043 Sed-Chr7:697464 Sed09g0427 Sed-Chr9:4287179 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3636 . 164 589 ARIADNE family AT4G34370 71.5 9.8e-182 634.0
Sed01g0314 . 164 589 ARIADNE family AT4G34370 70.3 1.4e-180 630.2
Sed01g0316 . 164 543 ARIADNE family AT4G34370 75.5 1.1e-175 614.0
Sed01g0315 . 164 542 ARIADNE family AT4G34370 75.5 5.2e-175 611.7
Sed05g3636 . 58 542 ARIADNE family AT2G16090 76.6 1.2e-223 773.5
Sed01g0316 . 58 544 ARIADNE family AT2G16090 76.5 7.6e-223 770.8
Sed01g0314 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed01g0315 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed05g3636 . 36 543 ARIADNE family AT3G27710 61.0 1.1e-182 637.5
Sed01g0314 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0316 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0315 . 37 542 ARIADNE family AT3G27710 60.7 1.0e-180 630.9
Sed01g0314 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0315 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0316 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed05g3636 . 44 522 ARIADNE family AT3G27720 54.2 2.7e-143 506.5
Sed07g0043 . 56 530 ARIADNE family AT1G05890 73.5 4.8e-219 758.4
Sed03g1846 . 66 545 ARIADNE family AT1G05890 71.9 1.4e-218 756.9
Sed09g0427 . 57 524 ARIADNE family AT1G05890 73.9 5.8e-217 751.5
Sed03g1846 . 41 600 ARIADNE family AT1G65430 75.4 5.9e-259 891.0
Sed07g0043 . 1 583 ARIADNE family AT1G65430 67.4 5.0e-242 834.7
Sed09g0427 . 16 583 ARIADNE family AT1G65430 68.5 2.0e-238 822.8
Sed03g1846 . 53 463 ARIADNE family AT2G31780 56.2 3.1e-146 516.2
Sed07g0043 . 53 449 ARIADNE family AT2G31780 57.6 2.4e-143 506.5
Sed09g0427 . 55 449 ARIADNE family AT2G31780 56.7 6.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72