Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0053 ATGGGATCCTGCCTCTCTGGGGACCGCAACCATCGCGCCATCACTCATTCCACTTCGAAACTTACCCGGAAGGGTTCTCCTCCCGCCTATGATTCTTCGAGGGAGATGTCGCTTCATCGAGTCCCCGGCCGCATGTTTTTGAATGGAGCCACGGGTCACGCCACCCTCTTTTCTAAGCAAGGCAGGAAAGGCATCAATCAGGACTCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAGGATACAATATTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTTCAAAGAAAGTGAGAGATTCTCTCCCTCTAAAACTGTGTGCTCAGTTGGAATTGGATGCTACCAGTTATGAAGGACAAAATGATGCGATATGTCAAGTCTCTCCACCAACACTGATTTACACGAACTCTGAAACCTCTCATTGCGAACTTGGTGCTAGTCAGGGAAGTAACAATGACATTTATGCCATGAAAGAATCTTTTCTGAAGGCTTTTAAGGTGGTGGACAAGGAACTTAAACTACATCCATACATCGAATGCCATACCAGTGGTACAACATCAGTTGCTTTGGTAAAAAAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACTAGAGATGAAGATAACTTTCTTGTTCCAGTTCAGTTGACTCTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAGAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTAAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACCGCGATTCTCCAGGTCTTGCTATGGCCAGATCCTTCGGAGATTTCTGTTTAAAAGACTTTGGCCTGATAGCCGTTCCTGACGTTTCTTGTTATCATCTTACTGAGAAAGATGAATTTGTTGTGCTTGCTACAGATGGAGTTTGGGATGTTCTCTCAAATGAGGAGGTTGTGGCAATTGTTGCATCTTCTCCGAGATCCTCTGCAGCCGGTACGCTTGTGGACTCGGCTAATCGAGCATGGAGATCGAAGTATCCTACCGCCAAGATGGATGATTGCACTGTAGTCTGTCTGTACCTGGACTCTAATGAAGAGTGTTAA 1113 45.73 MGSCLSGDRNHRAITHSTSKLTRKGSPPAYDSSREMSLHRVPGRMFLNGATGHATLFSKQGRKGINQDSMIVWENFGSKEDTIFCGVFDGHGPFGHMVSKKVRDSLPLKLCAQLELDATSYEGQNDAICQVSPPTLIYTNSETSHCELGASQGSNNDIYAMKESFLKAFKVVDKELKLHPYIECHTSGTTSVALVKKGRDLIIGNVGDSRAVLGTRDEDNFLVPVQLTLDLKPNLPREAERIRLCKGRIFALKNEPEIFRVWLPNRDSPGLAMARSFGDFCLKDFGLIAVPDVSCYHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAAGTLVDSANRAWRSKYPTAKMDDCTVVCLYLDSNEEC 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 730525 734081 + Sed0027629.3 Sed07g0053 718917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0053 370 Pfam Protein phosphatase 2C 60 331 IPR001932 -
Sed07g0053 370 Gene3D - 48 369 IPR036457 -
Sed07g0053 370 SMART PP2C_4 42 362 IPR001932 -
Sed07g0053 370 MobiDBLite consensus disorder prediction 1 34 - -
Sed07g0053 370 CDD PP2Cc 53 364 IPR001932 -
Sed07g0053 370 PANTHER PROTEIN PHOSPHATASE 54 362 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g0053 370 SUPERFAMILY PP2C-like 53 366 IPR036457 -
Sed07g0053 370 ProSiteProfiles PPM-type phosphatase domain profile. 53 364 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0051 Sed-Chr7:730525 Sed07g0053 Sed-Chr7:730525 8.60E-219 dispersed
Sed07g0053 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.30E-169 dispersed
Sed07g0052 Sed-Chr7:730525 Sed07g0053 Sed-Chr7:730525 8.60E-219 tandem
Sed07g0053 Sed-Chr7:730525 Sed07g0054 Sed-Chr7:730525 3.80E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0053 - - - 0.0