Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0055 ATGGTTTCAAAGAAAGTGAGAGATTCTCTCCCTCTAAAACTGTGTGCTCAGTTGGAATTGGATGCTACCAGTTATGAAGGACAAAATGATGCGATATGTCAAGTCTCTCCACCAACACTGATTTACACGAACTCTGAAACCTCTCATTGCGAACTTGGTGCTAGTCAGGGAAGTAACAATGACATTTATGCCATGAAAGAATCTTTTCTGAAGGCTTTTAAGGTGGTGGACAAGGAACTTAAACTACATCCATACATCGAATGCCATACCAGTGGTACAACATCAGTTGCTTTGGTAAAAAAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACTAGAGATGAAGATAACTTTCTTGTTCCAGTTCAGTTGACTCTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAGAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTAAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACCGCGATTCTCCAGGTCTTGCTATGGCCAGATCCTTCGGAGATTTCTGTTTAAAAGACTTTGGCCTGATAGCCGTTCCTGACGTTTCTTGTTATCATCTTACTGAGAAAGATGAATTTGTTGTGCTTGCTACAGATGGAGTTTGGGATGTTCTCTCAAATGAGGAGGTTGTGGCAATTGTTGCATCTTCTCCGAGATCCTCTGCAGCCGGTACGCTTGTGGACTCGGCTAATCGAGCATGGAGATCGAAGTATCCTACCGCCAAGATGGATGATTGCACTGTAGTCTGTCTGTACCTGGACTCTAATGAAGAGTGTTAA 825 43.64 MVSKKVRDSLPLKLCAQLELDATSYEGQNDAICQVSPPTLIYTNSETSHCELGASQGSNNDIYAMKESFLKAFKVVDKELKLHPYIECHTSGTTSVALVKKGRDLIIGNVGDSRAVLGTRDEDNFLVPVQLTLDLKPNLPREAERIRLCKGRIFALKNEPEIFRVWLPNRDSPGLAMARSFGDFCLKDFGLIAVPDVSCYHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAAGTLVDSANRAWRSKYPTAKMDDCTVVCLYLDSNEEC 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 730525 734081 + Sed0027629.5 Sed07g0055 718919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0055 274 SMART PP2C_4 2 266 IPR001932 -
Sed07g0055 274 CDD PP2Cc 55 268 IPR001932 -
Sed07g0055 274 Pfam Protein phosphatase 2C 59 235 IPR001932 -
Sed07g0055 274 SUPERFAMILY PP2C-like 60 270 IPR036457 -
Sed07g0055 274 PANTHER PROTEIN PHOSPHATASE 2 266 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g0055 274 Gene3D - 1 273 IPR036457 -
Sed07g0055 274 ProSiteProfiles PPM-type phosphatase domain profile. 1 268 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0055 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.50E-122 dispersed
Sed07g0054 Sed-Chr7:730525 Sed07g0055 Sed-Chr7:730525 3.70E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0055 - - - 0.0