Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0082 ATGAACTGGTTCATTAATGGTGGATTTATGGAAACTAAGGCTGGTTTGCTGGGTGGGTGGGGGAAGATATGGCTCCAATTTTGGGAGAAGCTTATTGGGAACTGTTGCAAGATGCATCACCAGCACTACCAGTATTTTGGATCCATGAAAGCTAGACAAAATTGGTGGAGAAGGCTTTTGGTGGCTTGGGTTCTTTTCTCTATCTTTGGTTCTTTATGGATCTTTCATTACATGAGTTCACAAGCTACAGAGAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGGATGCTTCAAGATCAGTTTAATGTCAGCTTGAACCATATCCAAGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAGAATCCATCTGCAATAGATCAGAGGACCTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCTTATGCAGTAAGGGTGCTCCATTCCGAAAGAGAACATTTTGAGAAGCAGCAGGGCTGGACGATTAAAAGTATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGATGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCACGTCGTTTCTCTCGATATGCTGTCGGGAAAGGAAGACCGTAATAATGTATTACGCGCTAGAGCATCAGGGAAGGGAGTCTTAACTGCTCCATTCAAATTAATCAAAACAAATCGTTTAGGAGTTATTCTTACATTTGCTGTCTACAAGAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGGTTCAAGCTACAGATGGGTATCTTGGTGGAGTATTTGATATCGAGTCGCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTGTATGATACCACTAACCAATCACACCCAATCAGTATGTACGGTAAAGATGTATCGGAAGATGGGTTGGAGCATGTCAGCCCACTTAACTTTGGGGATCCAGATAGAAAGCATGAGATGCGATGCAGGTTCAAACAGAAACAACCTTGGCCATGGTTAGCAGTGACTACTTCATTTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTCCATGCGACCTTGAACCGAATCGCCAAAGTGGAGGATGATTACCATGAGATGATGCAACTCAAGAAACGAGCAGAAGATGCTGATGTTGCCAAATCTCAGTTCCTTGCAACTGTGTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGACTTGGATGTCACTCAGCAAGATTTTGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTGTCACTGATAAATGAGGTTTTGGATCAAGCCAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCCATACCATTCAATCTGCGAGTGATTTTGGATGATGTTTTGTCACTCTTTTCTGGGAAATCTCAAGAGAAAGGATTGGAGGTGGCAGTCTACATCTCAGATAGTGTTCCTGAGATGCTTGTTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTATGGGAAACTCAATCAAGTTCACAGAGAAGGGACACATATTTGTCACTGTTGATCTTGTCGAGGAGGTTATTGAATCGATTCATCTTGAGATCGAGTCATCAACAAAGAGCACCTTGAGTGGCTATCCTATTGCCAATAGACGCCTCAGCTGGGCAGGATTCCAAACGTTTGATCAAGATGGAGACACGGCTCATCATTTCCTGCCATCTTCACCAGACCATATTAACCTCATAGTATCTGTGGAAGATACAGGCGTCGGTATTCCTGTAGAAGCCCAATCACGTGTTTTCACTCCCTTCATGCAGGTTCGACCGTCCATCTCTAGAACCCATGGGGGAACGGGTATCGGGTTGAGTATTAGCAAATGTCTGGTTGGCCTCATGAATGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTTACGGCAGTTTTCTCTAAAGTGCCAAGTGAGTATAACAAAACCCAGCAAATTAAGAACACTCCCATCCCAGCATCCTCAGAGTTTAAAGGTATGAGGGCATTAGTTGTGGATCATCGACCTATTCGGGCCAAAGTATCAAGATATCATATTAGACGTCTTGGAATAACTGTCGAATTGTTACCCGACTTGAACCAATGTCTGTCAACCATGAGTATTTGTGGTTCAGCTATCAATATGATTTTTGTCGAGCAAGATCTTTGGGAGAAGGATTCAAGCACATCAGATCACTTTATCAAGAACTTGAGAGATTCTTATGGGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAGCTAGCAATATAGTTTCTGATGTACTCAGTCCCACAGTCATCTTAAAGCCCTTGAGGATAGGCATGCTTGCTGCCTCTCTACACCGAACCATGGGTGCCGGGATAAAGTGTAGTCCTCGCGACGGAGAGCTTCCTGTACTATCTCTTCGTAATTTACTTCTTGGTCGGAAAATTCTCGTAATTGATGACAATAGGGTTAACCGTATCGTCGCTGCTGGTGCTCTAAAACGGTATGGAGCTGATGTGGTATGTGAAAACAGTGGAAAAGACGCGATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCGGAAATGGATGGCTTTCAAGCTACAAGAAGAATTCGGGAAATCGAACGTCGTATCAATGATGGTATTGAAGTTGGAGAACTATCAAAAGAAGGGTACGAAAATAAATGTTATTGGCGTGTACCCATCTTGGCCATGACCGCAGACGTAATCCAGGCTACGCATGACGAATGCCTTCGGTGTGGGATGGATGGATATGTTTCAAAGCCATTTGAAGTCGAACGACTTTACCGAGAAGTTTCTCAATTTTTCCACAATACCGCAAATGGAACTTTATAG 3027 43.54 MNWFINGGFMETKAGLLGGWGKIWLQFWEKLIGNCCKMHHQHYQYFGSMKARQNWWRRLLVAWVLFSIFGSLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSLNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKSMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGKEDRNNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERVQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLEHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAVTTSFGILIIALLLGYIFHATLNRIAKVEDDYHEMMQLKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDFVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRVILDDVLSLFSGKSQEKGLEVAVYISDSVPEMLVGDPGRFRQIITNLMGNSIKFTEKGHIFVTVDLVEEVIESIHLEIESSTKSTLSGYPIANRRLSWAGFQTFDQDGDTAHHFLPSSPDHINLIVSVEDTGVGIPVEAQSRVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMNGEIGFVSVPKIGSTFTFTAVFSKVPSEYNKTQQIKNTPIPASSEFKGMRALVVDHRPIRAKVSRYHIRRLGITVELLPDLNQCLSTMSICGSAINMIFVEQDLWEKDSSTSDHFIKNLRDSYGVPPKLFLLTSSISSSKASNIVSDVLSPTVILKPLRIGMLAASLHRTMGAGIKCSPRDGELPVLSLRNLLLGRKILVIDDNRVNRIVAAGALKRYGADVVCENSGKDAIRLLTPPHHFDACFMDIQMPEMDGFQATRRIREIERRINDGIEVGELSKEGYENKCYWRVPILAMTADVIQATHDECLRCGMDGYVSKPFEVERLYREVSQFFHNTANGTL 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 885634 892715 + Sed0020303.2 Sed07g0082 718946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0082 1008 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 999 IPR050956 -
Sed07g0082 1008 FunFam Histidine kinase 4 131 360 - -
Sed07g0082 1008 SMART REC_2 862 996 IPR001789 GO:0000160(InterPro)
Sed07g0082 1008 ProSiteProfiles Response regulatory domain profile. 716 837 IPR001789 GO:0000160(InterPro)
Sed07g0082 1008 Pfam CHASE domain 130 326 IPR006189 -
Sed07g0082 1008 SUPERFAMILY CheY-like 711 837 IPR011006 -
Sed07g0082 1008 Gene3D - 858 1005 - -
Sed07g0082 1008 ProSiteProfiles CHASE domain profile. 127 353 IPR006189 -
Sed07g0082 1008 SMART HKATPase_4 526 690 IPR003594 -
Sed07g0082 1008 Gene3D - 478 690 IPR036890 -
Sed07g0082 1008 CDD HATPase_EvgS-ArcB-TorS-like 531 688 - -
Sed07g0082 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 468 685 IPR036890 -
Sed07g0082 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 614 685 IPR003594 -
Sed07g0082 1008 SUPERFAMILY CheY-like 861 1000 IPR011006 -
Sed07g0082 1008 Coils Coil 391 411 - -
Sed07g0082 1008 Gene3D - 78 130 - -
Sed07g0082 1008 SMART HisKA_10 414 479 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed07g0082 1008 ProSiteProfiles Histidine kinase domain profile. 421 690 IPR005467 -
Sed07g0082 1008 Pfam Response regulator receiver domain 864 932 IPR001789 GO:0000160(InterPro)
Sed07g0082 1008 Gene3D - 383 477 - -
Sed07g0082 1008 FunFam Histidine kinase 4 386 477 - -
Sed07g0082 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 399 480 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed07g0082 1008 SMART CHASE_2 127 328 IPR006189 -
Sed07g0082 1008 Pfam His Kinase A (phospho-acceptor) domain 414 479 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed07g0082 1008 CDD REC_hyHK_CKI1_RcsC-like 864 996 - -
Sed07g0082 1008 CDD HisKA 414 475 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed07g0082 1008 PRINTS Bacterial sensor protein C-terminal signature 650 668 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed07g0082 1008 PRINTS Bacterial sensor protein C-terminal signature 633 643 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed07g0082 1008 PRINTS Bacterial sensor protein C-terminal signature 615 629 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed07g0082 1008 Gene3D CHASE domain 131 360 IPR042240 -
Sed07g0082 1008 ProSiteProfiles Response regulatory domain profile. 863 1000 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0082 Sed-Chr7:885634 Sed09g0383 Sed-Chr9:3495459 0.00E+00 dispersed
Sed07g0081 Sed-Chr7:885634 Sed07g0082 Sed-Chr7:885634 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38965 PF03924 CHASE 7.40E-38 CL0165 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0082 K14489 - csv:101216313 1785.77