Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0085 ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGTTTCAACATTCAGAAAATGCTGTCCATGATAATAGTTGTTCATCTTTTGAGATCCAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG 2886 41.61 MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEGSNSNLIDYYEMSNEDQFSVFQHSENAVHDNSCSSFEIQDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 898735 911097 - Sed0017341.1 Sed07g0085 718949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0085 961 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 930 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed07g0085 961 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 MobiDBLite consensus disorder prediction 158 178 - -
Sed07g0085 961 SMART iq_5 741 763 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SMART iq_5 798 820 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SMART iq_5 821 843 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 ProSiteProfiles IQ motif profile. 742 770 - -
Sed07g0085 961 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 ProSiteProfiles IQ motif profile. 800 828 - -
Sed07g0085 961 Pfam IQ calmodulin-binding motif 801 819 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 Pfam IQ calmodulin-binding motif 824 843 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SUPERFAMILY E set domains 401 485 IPR014756 -
Sed07g0085 961 Gene3D Immunoglobulins 395 484 IPR013783 -
Sed07g0085 961 FunFam Calmodulin-binding transcription activator 2 798 846 - -
Sed07g0085 961 Gene3D - 485 689 IPR036770 -
Sed07g0085 961 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 ProSiteProfiles Ankyrin repeat region circular profile. 624 650 - -
Sed07g0085 961 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 Pfam Ankyrin repeats (3 copies) 597 684 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 Pfam IPT/TIG domain 401 473 IPR002909 -
Sed07g0085 961 CDD IPT 401 485 - -
Sed07g0085 961 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 Gene3D - 798 846 - -
Sed07g0085 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 850 IPR027417 -
Sed07g0085 961 ProSiteProfiles IQ motif profile. 822 846 - -
Sed07g0085 961 SUPERFAMILY Ankyrin repeat 593 686 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0085 K21596 - - csv:101222798 1558.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0085 Sed-Chr7:898735 Sed07g0087 Sed-Chr7:898735 0.00E+00 dispersed
Sed07g0085 Sed-Chr7:898735 Sed07g0086 Sed-Chr7:898735 0.00E+00 tandem
Sed04g1759 Sed-Chr4:32211932 Sed07g0085 Sed-Chr7:898735 3.10E-100 transposed
Sed07g0085 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38966 PF03859 CG-1 1.70E-48 No_clan Sed TF