Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0085 ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGTTTCAACATTCAGAAAATGCTGTCCATGATAATAGTTGTTCATCTTTTGAGATCCAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG 2886 41.61 MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEGSNSNLIDYYEMSNEDQFSVFQHSENAVHDNSCSSFEIQDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 898735 911097 - Sed0017341.1 Sed07g0085 718949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0085 961 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 930 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed07g0085 961 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 MobiDBLite consensus disorder prediction 158 178 - -
Sed07g0085 961 SMART iq_5 741 763 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SMART iq_5 798 820 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SMART iq_5 821 843 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 ProSiteProfiles IQ motif profile. 742 770 - -
Sed07g0085 961 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 ProSiteProfiles IQ motif profile. 800 828 - -
Sed07g0085 961 Pfam IQ calmodulin-binding motif 801 819 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 Pfam IQ calmodulin-binding motif 824 843 IPR000048 GO:0005515(InterPro)
Sed07g0085 961 SUPERFAMILY E set domains 401 485 IPR014756 -
Sed07g0085 961 Gene3D Immunoglobulins 395 484 IPR013783 -
Sed07g0085 961 FunFam Calmodulin-binding transcription activator 2 798 846 - -
Sed07g0085 961 Gene3D - 485 689 IPR036770 -
Sed07g0085 961 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 ProSiteProfiles Ankyrin repeat region circular profile. 624 650 - -
Sed07g0085 961 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 Pfam Ankyrin repeats (3 copies) 597 684 IPR002110 GO:0005515(InterPro)
Sed07g0085 961 Pfam IPT/TIG domain 401 473 IPR002909 -
Sed07g0085 961 CDD IPT 401 485 - -
Sed07g0085 961 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
Sed07g0085 961 Gene3D - 798 846 - -
Sed07g0085 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 850 IPR027417 -
Sed07g0085 961 ProSiteProfiles IQ motif profile. 822 846 - -
Sed07g0085 961 SUPERFAMILY Ankyrin repeat 593 686 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0085 Sed-Chr7:898735 Sed07g0087 Sed-Chr7:898735 0.00E+00 dispersed
Sed07g0085 Sed-Chr7:898735 Sed07g0086 Sed-Chr7:898735 0.00E+00 tandem
Sed04g1759 Sed-Chr4:32211932 Sed07g0085 Sed-Chr7:898735 3.10E-100 transposed
Sed07g0085 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38966 PF03859 CG-1 1.70E-48 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0085 K21596 - csv:101222798 1558.12