Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0085 | ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGTTTCAACATTCAGAAAATGCTGTCCATGATAATAGTTGTTCATCTTTTGAGATCCAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG | 2886 | 41.61 | MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEGSNSNLIDYYEMSNEDQFSVFQHSENAVHDNSCSSFEIQDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV | 961 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 898735 | 911097 | - | Sed0017341.1 | Sed07g0085 | 718949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0085 | 961 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 5 | 930 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Sed07g0085 | 961 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
Sed07g0085 | 961 | SMART | iq_5 | 741 | 763 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | SMART | iq_5 | 798 | 820 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | SMART | iq_5 | 821 | 843 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | ProSiteProfiles | IQ motif profile. | 742 | 770 | - | - | |
Sed07g0085 | 961 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 7 | 133 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0085 | 961 | ProSiteProfiles | IQ motif profile. | 800 | 828 | - | - | |
Sed07g0085 | 961 | Pfam | IQ calmodulin-binding motif | 801 | 819 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | Pfam | IQ calmodulin-binding motif | 824 | 843 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | SUPERFAMILY | E set domains | 401 | 485 | IPR014756 | - | |
Sed07g0085 | 961 | Gene3D | Immunoglobulins | 395 | 484 | IPR013783 | - | |
Sed07g0085 | 961 | FunFam | Calmodulin-binding transcription activator 2 | 798 | 846 | - | - | |
Sed07g0085 | 961 | Gene3D | - | 485 | 689 | IPR036770 | - | |
Sed07g0085 | 961 | ProSiteProfiles | Ankyrin repeat profile. | 624 | 656 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | ProSiteProfiles | Ankyrin repeat region circular profile. | 624 | 650 | - | - | |
Sed07g0085 | 961 | SMART | CG_1_2 | 10 | 128 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0085 | 961 | Pfam | Ankyrin repeats (3 copies) | 597 | 684 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0085 | 961 | Pfam | IPT/TIG domain | 401 | 473 | IPR002909 | - | |
Sed07g0085 | 961 | CDD | IPT | 401 | 485 | - | - | |
Sed07g0085 | 961 | Pfam | CG-1 domain | 13 | 126 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0085 | 961 | Gene3D | - | 798 | 846 | - | - | |
Sed07g0085 | 961 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 744 | 850 | IPR027417 | - | |
Sed07g0085 | 961 | ProSiteProfiles | IQ motif profile. | 822 | 846 | - | - | |
Sed07g0085 | 961 | SUPERFAMILY | Ankyrin repeat | 593 | 686 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0085 | Sed-Chr7:898735 | Sed07g0087 | Sed-Chr7:898735 | 0.00E+00 | dispersed | |
Sed07g0085 | Sed-Chr7:898735 | Sed07g0086 | Sed-Chr7:898735 | 0.00E+00 | tandem | |
Sed04g1759 | Sed-Chr4:32211932 | Sed07g0085 | Sed-Chr7:898735 | 3.10E-100 | transposed | |
Sed07g0085 | Sed-Chr7:898735 | Sed09g0385 | Sed-Chr9:3518840 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38966 | PF03859 | CG-1 | 1.70E-48 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0085 | K21596 | - | csv:101222798 | 1558.12 |