Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0086 ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG 2769 41.93 MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 898735 911097 - Sed0017341.2 Sed07g0086 718950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0086 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 287 891 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed07g0086 922 Gene3D Immunoglobulins 356 445 IPR013783 -
Sed07g0086 922 MobiDBLite consensus disorder prediction 158 178 - -
Sed07g0086 922 SUPERFAMILY E set domains 362 446 IPR014756 -
Sed07g0086 922 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 811 IPR027417 -
Sed07g0086 922 Gene3D - 759 807 - -
Sed07g0086 922 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 SUPERFAMILY Ankyrin repeat 554 647 IPR036770 -
Sed07g0086 922 FunFam Calmodulin-binding transcription activator 2 759 807 - -
Sed07g0086 922 SMART iq_5 782 804 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 SMART iq_5 702 724 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 SMART iq_5 759 781 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 CDD IPT 362 446 - -
Sed07g0086 922 ProSiteProfiles IQ motif profile. 783 807 - -
Sed07g0086 922 ProSiteProfiles IQ motif profile. 761 789 - -
Sed07g0086 922 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 Pfam Ankyrin repeats (3 copies) 558 645 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 ProSiteProfiles IQ motif profile. 703 731 - -
Sed07g0086 922 ProSiteProfiles Ankyrin repeat region circular profile. 585 611 - -
Sed07g0086 922 Gene3D - 446 650 IPR036770 -
Sed07g0086 922 SMART ANK_2a 585 614 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 Pfam IQ calmodulin-binding motif 762 780 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 Pfam IPT/TIG domain 362 434 IPR002909 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0086 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed07g0085 Sed-Chr7:898735 Sed07g0086 Sed-Chr7:898735 0.00E+00 tandem
Sed07g0086 Sed-Chr7:898735 Sed07g0087 Sed-Chr7:898735 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38967 PF03859 CG-1 1.60E-48 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0086 K21596 - csv:101222798 1481.46