Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0086 | ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG | 2769 | 41.93 | MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV | 922 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 898735 | 911097 | - | Sed0017341.2 | Sed07g0086 | 718950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0086 | 922 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 287 | 891 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Sed07g0086 | 922 | Gene3D | Immunoglobulins | 356 | 445 | IPR013783 | - | |
Sed07g0086 | 922 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
Sed07g0086 | 922 | SUPERFAMILY | E set domains | 362 | 446 | IPR014756 | - | |
Sed07g0086 | 922 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 7 | 133 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0086 | 922 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 705 | 811 | IPR027417 | - | |
Sed07g0086 | 922 | Gene3D | - | 759 | 807 | - | - | |
Sed07g0086 | 922 | Pfam | CG-1 domain | 13 | 126 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0086 | 922 | ProSiteProfiles | Ankyrin repeat profile. | 585 | 617 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | SUPERFAMILY | Ankyrin repeat | 554 | 647 | IPR036770 | - | |
Sed07g0086 | 922 | FunFam | Calmodulin-binding transcription activator 2 | 759 | 807 | - | - | |
Sed07g0086 | 922 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | SMART | iq_5 | 702 | 724 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | SMART | iq_5 | 759 | 781 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | CDD | IPT | 362 | 446 | - | - | |
Sed07g0086 | 922 | ProSiteProfiles | IQ motif profile. | 783 | 807 | - | - | |
Sed07g0086 | 922 | ProSiteProfiles | IQ motif profile. | 761 | 789 | - | - | |
Sed07g0086 | 922 | SMART | CG_1_2 | 10 | 128 | IPR005559 | GO:0003677(InterPro) | |
Sed07g0086 | 922 | Pfam | Ankyrin repeats (3 copies) | 558 | 645 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | ProSiteProfiles | IQ motif profile. | 703 | 731 | - | - | |
Sed07g0086 | 922 | ProSiteProfiles | Ankyrin repeat region circular profile. | 585 | 611 | - | - | |
Sed07g0086 | 922 | Gene3D | - | 446 | 650 | IPR036770 | - | |
Sed07g0086 | 922 | SMART | ANK_2a | 585 | 614 | IPR002110 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | Pfam | IQ calmodulin-binding motif | 762 | 780 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | Pfam | IQ calmodulin-binding motif | 785 | 804 | IPR000048 | GO:0005515(InterPro) | |
Sed07g0086 | 922 | Pfam | IPT/TIG domain | 362 | 434 | IPR002909 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0086 | Sed-Chr7:898735 | Sed09g0385 | Sed-Chr9:3518840 | 0.00E+00 | dispersed | |
Sed07g0085 | Sed-Chr7:898735 | Sed07g0086 | Sed-Chr7:898735 | 0.00E+00 | tandem | |
Sed07g0086 | Sed-Chr7:898735 | Sed07g0087 | Sed-Chr7:898735 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38967 | PF03859 | CG-1 | 1.60E-48 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0086 | K21596 | - | csv:101222798 | 1481.46 |