Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0086 ATGAACGCCGGATATGATATTAATGAACTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATTTTACAGAATCATGACAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTTCTCCGTTTTTTCCGTAAAGATGGCCATAGCTGGAGGAAAAAAAGGGATGGGAAAACCGTTGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTGGACCACATTGTTCTTGTACATTACAGAGATATTAATGAGGGAAGGTCTGGGACAGAAAGTGTTCCAGAATTATCTCCAGCATCGGCTTCTACTTACAGTTCCTATTCTTCTCAAAATCTTGCTTCGGAATATCAACAGAATTCGTTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTATTGGGTCAAATGGTGTGGATGGGTGGTATGAAATATCAGAATTAGAAAGTTCAAACAAATGTGAAGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGAAAGCTTGAAAGACATTGCTCCATTTTATGGTCACGAGGAAGATGCTAATGGAAAACATCACCAATACGCAATGCCACACGAGTTTATGTTTAGTAGTGAAGGAACACAACCATGGGGTGATGGACTAGGTTCAAGTATAACAGTAGATTTTGAGTCTCAAGATAGACAATCTCTCCTATGGAATGAAAATGAAAAACCATCATCATCTTCAAGTAGAAGTACAGCTGTGGACAATGAACATTGCAACTGGGTGCACAGCAGAGGAAAAACTTCTCCTTTGCTAGGAAGCTGCACATCTCCAGAATATTCTTCACCACTACATAATCATGATGCTAATTCCAACTACCATAGACCGGTTCTTAAACAAAACCATGGAAATTCTTTTGAAGTTGACACCAGTTTAATTGTTGCACAAGTGAAGAAATTTACAATCAGCCAAATTGTACCCGAGCAGGGTTATGCCTCAGAGAACACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCAACATGGACTTGTATGTTTGGAGATATTGAGGTTCCTCTTCAAATTGTTCAAAATGGGGTTTTTTGTTGCGAAGCGCCTCCACACCTTCCTGGGAAGGTTTCTTTCTACATTACATCGGGCAATCGGGAACCCTGCAGTGAACTCAGGGAGTTTGAATATAGAATGAACGTTTGCAGTCATTGCCAATCACATTCAAGTGGGGTTACGAAGAGGCCGGAGGAGCTGTTATTACTCGTCAGGCTTGTGCAATTGTTGCTCTCTGACTCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTAAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTTGTTGGTAGTGAAACTCATTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAAGTTGCATCTCTGGCTTTCTCGCCAATGGAAAGATAGACACAATCTGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATCATACACATGATTGCTGGCTTGGGCTATGCGTGGGCATTAAATCCAATTCTCAGTTGTGGAATGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCCGAAGCGTCAGCTGGCGCTGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACTGCAGCAGCTATAGCAGACATCCATGGACACAAAGGACTTGCTGGTTATTTGTCTGAGGTTGCTCTTACTACTCATCTTTCATCTCTCACATTTGAAGAGGGTGAGCTTTCCAAAGACTCTGCGGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGAAGCCTTTCTTCCCCTGAGGATTATATCCCTCTAAAAGATACCTTAGCTGCAGTCAGAAATGCTGCTCAGGCAGCGGCCCGTATTCAATCGGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAAGAGACGGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTTGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTTCAATGCTGCTGCATTATCCATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAGGTTAGAAAGCATTACAAAGTAATTTGTTGGGCTGTTGGAGTTCTTGAAAAAGTTGTATTGCGGTGGAGAAGGAAAAGAGTTGGTTTGAGAGGATTTCGTAGTGGGATAAGGTCCATTGATGAACATGAAGATGACGATATTACAAAATTGTTTCGCAAACAAAGAGTGGAAGGGACTATCGACGAGGATGTTTCACGAGTCATATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCTAAGGCTGAACTCAGTGGCAGCACTGGTAGCGAGTCTGCAGCATCGACTTCTCTCGACGACATTTCTGGGATGGAAGACTATAATCAATATCCTAAGTTTGTATAG 2769 41.93 MNAGYDINELYREAQTRWLKPPEVLFILQNHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGKTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSLDHIVLVHYRDINEGRSGTESVPELSPASASTYSSYSSQNLASEYQQNSLSPGSVEVSSDTGNRTIGSNGVDGWYEISELESSNKCEVSQALRRIEEQLSLNEESLKDIAPFYGHEEDANGKHHQYAMPHEFMFSSEGTQPWGDGLGSSITVDFESQDRQSLLWNENEKPSSSSSRSTAVDNEHCNWVHSRGKTSPLLGSCTSPEYSSPLHNHDANSNYHRPVLKQNHGNSFEVDTSLIVAQVKKFTISQIVPEQGYASENTKVIIIGSFLCDPSESTWTCMFGDIEVPLQIVQNGVFCCEAPPHLPGKVSFYITSGNREPCSELREFEYRMNVCSHCQSHSSGVTKRPEELLLLVRLVQLLLSDSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSETHSSTIDWLLQELLKDKLHLWLSRQWKDRHNLAGCSLSKKEQGIIHMIAGLGYAWALNPILSCGMNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAAAIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKDSAEVEAEMTVNCISNGSLSSPEDYIPLKDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKETVFAACIDEYGIDPNDIQGLFAMSKLNFSNRRDFNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKVICWAVGVLEKVVLRWRRKRVGLRGFRSGIRSIDEHEDDDITKLFRKQRVEGTIDEDVSRVISMVDSPDARQQYHRMLEGFREAKAELSGSTGSESAASTSLDDISGMEDYNQYPKFV 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 898735 911097 - Sed0017341.2 Sed07g0086 718950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0086 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 287 891 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed07g0086 922 Gene3D Immunoglobulins 356 445 IPR013783 -
Sed07g0086 922 MobiDBLite consensus disorder prediction 158 178 - -
Sed07g0086 922 SUPERFAMILY E set domains 362 446 IPR014756 -
Sed07g0086 922 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 811 IPR027417 -
Sed07g0086 922 Gene3D - 759 807 - -
Sed07g0086 922 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 SUPERFAMILY Ankyrin repeat 554 647 IPR036770 -
Sed07g0086 922 FunFam Calmodulin-binding transcription activator 2 759 807 - -
Sed07g0086 922 SMART iq_5 782 804 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 SMART iq_5 702 724 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 SMART iq_5 759 781 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 CDD IPT 362 446 - -
Sed07g0086 922 ProSiteProfiles IQ motif profile. 783 807 - -
Sed07g0086 922 ProSiteProfiles IQ motif profile. 761 789 - -
Sed07g0086 922 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
Sed07g0086 922 Pfam Ankyrin repeats (3 copies) 558 645 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 ProSiteProfiles IQ motif profile. 703 731 - -
Sed07g0086 922 ProSiteProfiles Ankyrin repeat region circular profile. 585 611 - -
Sed07g0086 922 Gene3D - 446 650 IPR036770 -
Sed07g0086 922 SMART ANK_2a 585 614 IPR002110 GO:0005515(InterPro)
Sed07g0086 922 Pfam IQ calmodulin-binding motif 762 780 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515(InterPro)
Sed07g0086 922 Pfam IPT/TIG domain 362 434 IPR002909 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0086 K21596 - - csv:101222798 1481.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0086 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed07g0085 Sed-Chr7:898735 Sed07g0086 Sed-Chr7:898735 0.00E+00 tandem
Sed07g0086 Sed-Chr7:898735 Sed07g0087 Sed-Chr7:898735 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38967 PF03859 CG-1 1.60E-48 No_clan Sed TF