Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0090 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACAGGCAAGTCACCTTCGCTAAGCGCCGAAACGGGCTGTTGAAGAAAGCTTACGAGCTCTCCGTGCTATGCGATGCCGAGGTTGCCCTCATCATCTTCTCCAATCGAGGAAAGCTCTACGAGTTTTGCAGTACTTCAAGCATGCTCAAAACATTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATATCTCCACAAGAGAAGCCTTAGAACTGAGCAGCCAACAAGAGTATTTGAAGCTTAAAGCTCGATATGAAGCTCTGCAAAGATCCCAAAGGAACCTTTTGGGAGAAGATCTTGGGCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACTAGGACTCAGTTTATGGTAGATCAACTCACTGATCTTCAACGTCAGGAATATCTTCTTAACGAAGCTAACAAGACTCTGAAACAAAGGTTAGTTGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGGCACCAAGCCCAGCCTCCTAATGATGCCTTCTTTCATCCTTTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCACATAACAACAGTGGTGAATGCTGGGCCAAGCATGAATAATTTTCTCCCAGGGTGGATGCCTTGA 732 43.58 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEPNISTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQFMVDQLTDLQRQEYLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRHQAQPPNDAFFHPLDCEPTLQIGYQPDHITTVVNAGPSMNNFLPGWMP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 917278 922707 - Sed0006335.1 Sed07g0090 718954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0090 243 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g0090 243 Coils Coil 126 146 - -
Sed07g0090 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 FunFam MADS-box transcription factor 7 13 98 - -
Sed07g0090 243 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g0090 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g0090 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g0090 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0875 Sed-Chr6:10318157 Sed07g0090 Sed-Chr7:917278 1.50E-78 dispersed
Sed07g0090 Sed-Chr7:917278 Sed09g0101 Sed-Chr9:753468 4.40E-54 dispersed
Sed07g0090 Sed-Chr7:917278 Sed09g0382 Sed-Chr9:3457690 1.50E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38968 PF01486 K-box 1.90E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0090 - - - 0.0