Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0119 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAAGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGACGATGGTAAGCAAGATCATCCAATGGTTCCACCTAACATTGCCAAATTGCCCTCTGGTATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAACAGATCCCCAAGGATGGACCTTTTGCCAATATTTCTTCTCAAACATTCACTTATCGGGAGCTTGCAATTGCGACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTTGAAAGCACTGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAGTTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTAAATCTGATCGGTTACTGTGCAGATGGGGATCAACGGCTTCTAGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCATGAAATTCCACCTGATAAGGAACCCTTAGATTGGAACACGAGAATGATAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTAGAGGAAGGATATCATCCAAAACTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACTAGGGTCATGGGAACTTACGGTTACTGTGCTCCCGAGTACGCCATGACAGGACAGTTAACTGTCAAGTCTGATGTTTATAGTTTCGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGACAGCACCCGACCCCAAGGCGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTCAACGATCGTAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTCTAGCTGTGGCGTCCATGTGTACCCAAGAACAGGCTGCGGCCCGTCCGCTGATTGGAGATGTAGTCACTGCCCTGTCTTATTTGGCAAATCAATCCAATGATCAAACTTCTCCTTCAGGTACTTCTGCTGCTCATAGAGTTTCTGGTGATCGGGACGAAAGACAGAATAGAGATGAGAAAGGTGGAAGAGTAGTGAGAAACGAAGAAGGGGTAACATCTGGACGAAGGTGGACATTGGATGGTCCCGAGAAGGATGACTCCCCAAAGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAACGTGCAGTCGCTGAGGCCAAGATGTGGGGGCGAGAAAAAAGACGAGAAAGCGAGGCACACAGCAGTTTTGATGGCTCTAATGGGTAG 1395 45.88 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDGPFANISSQTFTYRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMIIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSNDQTSPSGTSAAHRVSGDRDERQNRDEKGGRVVRNEEGVTSGRRWTLDGPEKDDSPKETARILNRDLDRERAVAEAKMWGREKRRESEAHSSFDGSNG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1090298 1095708 + Sed0026113.1 Sed07g0119 718983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0119 464 MobiDBLite consensus disorder prediction 412 457 - -
Sed07g0119 464 MobiDBLite consensus disorder prediction 1 64 - -
Sed07g0119 464 FunFam Serine/threonine-protein kinase PBS1 58 161 - -
Sed07g0119 464 Pfam Protein kinase domain 90 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0119 464 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Sed07g0119 464 MobiDBLite consensus disorder prediction 7 27 - -
Sed07g0119 464 CDD STKc_IRAK 91 359 - -
Sed07g0119 464 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0119 464 MobiDBLite consensus disorder prediction 380 404 - -
Sed07g0119 464 Gene3D Phosphorylase Kinase; domain 1 69 161 - -
Sed07g0119 464 SUPERFAMILY Protein kinase-like (PK-like) 67 359 IPR011009 -
Sed07g0119 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0119 464 MobiDBLite consensus disorder prediction 365 464 - -
Sed07g0119 464 PANTHER OS07G0668900 PROTEIN 20 382 - -
Sed07g0119 464 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Sed07g0119 464 Gene3D Transferase(Phosphotransferase) domain 1 162 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1214 Sed-Chr2:49030698 Sed07g0119 Sed-Chr7:1090298 4.90E-172 dispersed
Sed07g0119 Sed-Chr7:1090298 Sed12g0854 Sed-Chr12:5311168 8.10E-174 dispersed
Sed12g0493 Sed-Chr12:2921899 Sed07g0119 Sed-Chr7:1090298 1.90E-74 dispersed
Sed07g0119 Sed-Chr7:1090298 Sed09g0328 Sed-Chr9:2953055 5.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79417 PF00069 Pkinase 2.80E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0119 K13430 - csv:101219880 858.981