Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0119 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAAGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGACGATGGTAAGCAAGATCATCCAATGGTTCCACCTAACATTGCCAAATTGCCCTCTGGTATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAACAGATCCCCAAGGATGGACCTTTTGCCAATATTTCTTCTCAAACATTCACTTATCGGGAGCTTGCAATTGCGACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTTGAAAGCACTGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAGTTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTAAATCTGATCGGTTACTGTGCAGATGGGGATCAACGGCTTCTAGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCATGAAATTCCACCTGATAAGGAACCCTTAGATTGGAACACGAGAATGATAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTAGAGGAAGGATATCATCCAAAACTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACTAGGGTCATGGGAACTTACGGTTACTGTGCTCCCGAGTACGCCATGACAGGACAGTTAACTGTCAAGTCTGATGTTTATAGTTTCGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGACAGCACCCGACCCCAAGGCGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTCAACGATCGTAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTCTAGCTGTGGCGTCCATGTGTACCCAAGAACAGGCTGCGGCCCGTCCGCTGATTGGAGATGTAGTCACTGCCCTGTCTTATTTGGCAAATCAATCCAATGATCAAACTTCTCCTTCAGGTACTTCTGCTGCTCATAGAGTTTCTGGTGATCGGGACGAAAGACAGAATAGAGATGAGAAAGGTGGAAGAGTAGTGAGAAACGAAGAAGGGGTAACATCTGGACGAAGGTGGACATTGGATGGTCCCGAGAAGGATGACTCCCCAAAGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAACGTGCAGTCGCTGAGGCCAAGATGTGGGGGCGAGAAAAAAGACGAGAAAGCGAGGCACACAGCAGTTTTGATGGCTCTAATGGGTAG | 1395 | 45.88 | MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDGPFANISSQTFTYRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMIIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSNDQTSPSGTSAAHRVSGDRDERQNRDEKGGRVVRNEEGVTSGRRWTLDGPEKDDSPKETARILNRDLDRERAVAEAKMWGREKRRESEAHSSFDGSNG | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1090298 | 1095708 | + | Sed0026113.1 | Sed07g0119 | 718983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0119 | 464 | MobiDBLite | consensus disorder prediction | 412 | 457 | - | - | |
Sed07g0119 | 464 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Sed07g0119 | 464 | FunFam | Serine/threonine-protein kinase PBS1 | 58 | 161 | - | - | |
Sed07g0119 | 464 | Pfam | Protein kinase domain | 90 | 293 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0119 | 464 | FunFam | Serine/threonine-protein kinase PBS1 | 162 | 377 | - | - | |
Sed07g0119 | 464 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Sed07g0119 | 464 | CDD | STKc_IRAK | 91 | 359 | - | - | |
Sed07g0119 | 464 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0119 | 464 | MobiDBLite | consensus disorder prediction | 380 | 404 | - | - | |
Sed07g0119 | 464 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 161 | - | - | |
Sed07g0119 | 464 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 359 | IPR011009 | - | |
Sed07g0119 | 464 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g0119 | 464 | MobiDBLite | consensus disorder prediction | 365 | 464 | - | - | |
Sed07g0119 | 464 | PANTHER | OS07G0668900 PROTEIN | 20 | 382 | - | - | |
Sed07g0119 | 464 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524(InterPro) | |
Sed07g0119 | 464 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1214 | Sed-Chr2:49030698 | Sed07g0119 | Sed-Chr7:1090298 | 4.90E-172 | dispersed | |
Sed07g0119 | Sed-Chr7:1090298 | Sed12g0854 | Sed-Chr12:5311168 | 8.10E-174 | dispersed | |
Sed12g0493 | Sed-Chr12:2921899 | Sed07g0119 | Sed-Chr7:1090298 | 1.90E-74 | dispersed | |
Sed07g0119 | Sed-Chr7:1090298 | Sed09g0328 | Sed-Chr9:2953055 | 5.40E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79417 | PF00069 | Pkinase | 2.80E-44 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0119 | K13430 | - | csv:101219880 | 858.981 |