Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0124 ATGTGGGGAATCGTTCGGCAAAAAGCTGGCGCTGGAGCCTCCTCGATTCTGATTTCCAGCCAGTCTTTGCAGACACTTCGCCCTGCTGCCTCGGCATCAAGATACTATGCATCTGCTGCAAAAGAGATGACAGTGAGAGATGCTCTGAACTCTGCACTTGATGAAGAAATGTCTGCTGATCCTAAAGTATTTTTGATGGGCGAAGAGGTTGGAGAATATCAGGGTGCCTATAAGATAACCAAAGGGCTCTTGGATAAGTATGGTCCCGAGAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTTCTGGTATTGGTGTTGGCGCTGCTTACCATGGTCTAAAGCCTGTAGTGGAGTTTATGACATTTAATTTCTCCATGCAGGCCATTGATCATATAATTAACTCTGCGGCAAAAACAAATTATATGTCAGCTGGCCAAATTTCTGTGCCAATTGTCTTTAGAGGGCCTAATGGTGCAGCTGCTGGAGTTGGTGCTCAGCACTCTCAGTGTTTTGCAGCATGGTATGGCGCCTGTCCTGGTTTGAAAGTTTTGGCCCCATATTCATCTGAAGATGCTCGTGGGCTTTTAAAAGCTGCTATAAGGGATCCAGATCCTGTGGTGTTTCTTGAAAATGAATTATTATATGGTGAATCATTCCCTGTTTCAGCTGAGGTCCTTGATTCCAGTTTCACCGCTCCCATAGGAAAAGCTAAGATTGAGAGAGAAGGGAAGGACGTGACTATTACTGCTTTTTCAAAGATGGTGGGCTATGCACTTAAGGCAGCCGAAGTACTTTCCAAAGAAGGAATTAGTGCTGAGGTTATAAACCTGCGCTCTATTCGACCACTAGACAGAGCCACAATCAATGCTTCAGTTAGGAAGACCAACAGATTAGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCCGAGATCTGCGCATCTGTCGTAGAAGAAAGTTTTGGCTATCTTGATGCACCGGTTGAGAGGATTGCAGGGGCTGACGTTCCCATGCCTTATGCAGCGAATCTCGAAAGGATGGCTGTTCCTCAGGTTGAGGACATAGTTCGAGCAGCGAAAAGAGCATGCTACAGAGCCGTACCATTAGCTGCAACTGGTTGA 1131 46.51 MWGIVRQKAGAGASSILISSQSLQTLRPAASASRYYASAAKEMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLDKYGPERVLDTPITEAGFSGIGVGAAYHGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYGACPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREGKDVTITAFSKMVGYALKAAEVLSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRAVPLAATG 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1141880 1150664 + Sed0002747.1 Sed07g0124 718988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0124 376 FunFam Pyruvate dehydrogenase E1 component subunit beta 42 234 - -
Sed07g0124 376 Pfam Transketolase, pyrimidine binding domain 42 216 IPR005475 -
Sed07g0124 376 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 41 222 IPR029061 -
Sed07g0124 376 PANTHER DEHYDROGENASE RELATED 1 368 IPR027110 GO:0004739(InterPro)|GO:0004739(PANTHER)|GO:0005967(PANTHER)|GO:0006086(InterPro)|GO:0006086(PANTHER)
Sed07g0124 376 Gene3D - 42 234 - -
Sed07g0124 376 FunFam Pyruvate dehydrogenase E1 beta subunit 235 367 - -
Sed07g0124 376 Pfam Transketolase, C-terminal domain 236 358 IPR033248 -
Sed07g0124 376 Gene3D - 235 367 IPR009014 GO:0003824(InterPro)
Sed07g0124 376 CDD TPP_PYR_E1-PDHc-beta_like 47 213 - -
Sed07g0124 376 SUPERFAMILY TK C-terminal domain-like 231 365 IPR009014 GO:0003824(InterPro)
Sed07g0124 376 SMART Transket_pyr_3 43 218 IPR005475 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0124 K00162 - - csv:101220981 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0124 Sed-Chr7:1141880 Sed08g2666 Sed-Chr8:38808985 2.00E-66 dispersed
Sed07g0124 Sed-Chr7:1141880 Sed08g2665 Sed-Chr8:38808985 8.80E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45