Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0163 ATGACTTCCCAACTCACAGTTTGGTGTACAAATTCCATCAACTCTAACCCTTTAATACAAACTCTTTCCCATTCATTCCACCAACTCTCTATTCCCTTCTTTCTTGCCATTGTTTCCATAGACATGGCCGGCTTGGTCACCGGTTCCAGTTCCCAACGCTATCCCCACGATTCCGACGAGAGTCTTCGAGGATCTCTACCATCGTCAAGAACATGTCGAGTTTGTAGTGACGAAATAGGGCTCAAAGAAGATGGAAAAGTATTTGTGGCATGTGTTGTGTGCAATTTCCCTGTTTGTCGCCCTTGTTATGAGTATGAACGGAGTGAAGGAAATAAGTGTTGTCCTCAATGCAATAATCGCTACAAGCATCATAAAGGCTCCCCGAGAGTCATTGGCGACGACGAAGAAGCCGTCGATGGAGATGATTTTGATGATGAATTCCCCATTAAACACCTGAATGACAACTTTGAAACAAAACAGTCTAATCATTTGGATAACGATAACAACTACAATCAAAATCTCCACACATCCTTCTCTGTTGCAGGCAGTGTGAACGGGAAGGATTTGGAAGGCGAAAAGGAAGGTTATGGAAATGCAGAATGGAAGGAGAGAATCGATAAATGGAAAGTGAGGCAACAGAAGAGAGGATTTGGAAGCAAAGACGATGGAATCAACAACAACGATCAAGGCGAAGAAGACGATTACCTATTAGCAGAAGCTCGGCAGCCGCTATGGCGGAAAATCCCGATCCCTTCGAGCAGAATCAGTCCATACCGCATCATCATAGTCCTCCGCCTCGTGATTCTCGCGTTCTTCTTCCGTTTCCGGATCTTAACTCCCGCCTACGACGCGTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAGATCTGGTTCGGATTCTCCTGGATCCTCGACCAGTTCCCGAAATGGGCGCCGATCAACCGCGAGACCTACCTGGACCGCCTGACGATGCGGTTCGAGCGCGAAGGGGAGCCGAACCGCCTAGCGCCGATCGACTTCTTCGTGAGTTCGGTGGATCCGCTGAAGGAGCCGCCGATCATCACGGCGAACACGGTGCTGTCGATTCTGGCGGTGGATTATCCGGTGGAGAAGGTGAGCTGCTACGTGTCGGACGACGGAGCGTCGATGCTGCTGTTCGACGCGCTGGCGGAGACGGCGGAGTTCGCGAGGCGGTGGGTGCCGTTCTGCAAGAAGTTCAGCGTGGAGCCTCGGGCGCCGGAGTTCTACTTCTCGCAGAAGATGGATTACTTGAAGGACAAGGTGCAGCCGAGCTTTGTGAAGGAGAGGAGAGCCATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCGCAGAAGAAACCTGAAGAAGGTTGGGTGATGCAGGACGGAACTCCATGGCCGGGAAATCTCACCCGTGATCATCCCGGCATGATACAGGTGTACCTTGGAAGTGAAGGTGCACTTGATATAGAAGGTAAAGAGTTGCCTCGACTCGTATATGTTTCTCGTGAGAAACGACCTGGATATCAGCACCACAAGAAAGCCGGTGCTATGAATGCTCTTATTCGAGTTTCTGCAGTCCTTTCAAATGCACCATTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAAATTTGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGTCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGGCGGCTTTATATGGATATGAACCACCAGCCTCCGAGAAAAGGCCGAAAATGACATGCGATTGCTGGCCTTCATGGTGTAGCTGCTGTTGCGGTGGTTCAAGGAAGTCGAAGTCAAAGAAAAAAGGAGAAAGAGGTTTGCTTGGACGCCTGTTCACAAATAAGAAGAAAATGATGGGGAAGAGTTACGTAAGGAAAGGGTCTGGGCCAGTTTTTGATCTAGAAGAGATTGAAGAAGGGTTTGAAGGTTACGATGAGTTGGAGAAGTCGTCACTCATGTCGCAAAAGAATTTCGAGAAGAGATTCGGGCAGTCGCCAGTTTTCATTGCTTCAACCCTCAAGGAAGATGGAGGACTTCCAGAAGGGACTAACAGCACATCACTGGTTAAAGAAGCCATCCATGTTATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCTGTCACGGAGGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTTTACTGCATGCCGCAGAGACCAGCATTCAAGGGATCGGCTCCATTAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGGTGGGCGTTAGGTTCGGTTGAAATCTTCCTCAGTCGACACTGCCCGTTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAGAGGCTTGCCTACATCAACACCATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTCTGTCTTCTCACCGGAAAATTCATCATCCCAACTTTGACAAACTTAGCTAGCGTGTGGTTCATGGCCCTGTTTCTATCCATCATTGCAACAGCAGTGCTGGAGCTTAGATGGAGTGAAGTGAGTATCGAAGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGAGGTGTGTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCGGACGACACCGAGTTCGGTGAGCTCTATCTTTTCAAGTGGACGACGCTCCTCATCCCGCCGACCACGCTTATAATCTTGAACATGGTGGGAGTGGTTGCTGGAATTTCTGATGCAATCAACAATGGCTATGGTTCATGGGGTCCTTTATTTGGAAAGCTGTTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCCTTCCTAAAGGGTCTGATGGGTAGACAAAACAGAACCCCCACCATTGTTGTCCTCTGGTCCATCCTTCTTGCGTCGATATTTTCGCTCGTTTGGGTGCGAATCGATCCCTTCCTGGCCAAGCAAACTGGTCCTATTCTCAAACAATGTGGAGTGGATTGCTAG 3243 47.98 MTSQLTVWCTNSINSNPLIQTLSHSFHQLSIPFFLAIVSIDMAGLVTGSSSQRYPHDSDESLRGSLPSSRTCRVCSDEIGLKEDGKVFVACVVCNFPVCRPCYEYERSEGNKCCPQCNNRYKHHKGSPRVIGDDEEAVDGDDFDDEFPIKHLNDNFETKQSNHLDNDNNYNQNLHTSFSVAGSVNGKDLEGEKEGYGNAEWKERIDKWKVRQQKRGFGSKDDGINNNDQGEEDDYLLAEARQPLWRKIPIPSSRISPYRIIIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLTMRFEREGEPNRLAPIDFFVSSVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDALAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDIEGKELPRLVYVSREKRPGYQHHKKAGAMNALIRVSAVLSNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKICYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRAALYGYEPPASEKRPKMTCDCWPSWCSCCCGGSRKSKSKKKGERGLLGRLFTNKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPLNLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFLSIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLAKQTGPILKQCGVDC 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1442541 1448673 - Sed0005953.1 Sed07g0163 719027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0163 1080 Coils Coil 436 456 - -
Sed07g0163 1080 FunFam Cellulose synthase 455 629 - -
Sed07g0163 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 146 IPR013083 -
Sed07g0163 1080 Pfam Zinc-binding RING-finger 69 137 IPR027934 -
Sed07g0163 1080 SUPERFAMILY Nucleotide-diphospho-sugar transferases 352 899 IPR029044 -
Sed07g0163 1080 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 445 630 IPR029044 -
Sed07g0163 1080 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 244 1049 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed07g0163 1080 SUPERFAMILY RING/U-box 67 138 - -
Sed07g0163 1080 Pfam Cellulose synthase 338 1072 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed07g0163 1080 CDD mRING-HC-C4C4_CesA 71 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0163 Sed-Chr7:1442541 Sed08g0569 Sed-Chr8:3856602 0.00E+00 dispersed
Sed07g0163 Sed-Chr7:1442541 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0163 K10999 - csv:101205733 1890.93