Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g0182 | ATGGCTTCTACTACCGGTCTTGTAGTTGGATCTCTCGTTTGGTTGGAAGATTCTGAAGAAGCTTGGATAGAGGGCAAAGTTTTAGAAATTCGTGGCGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACAGTTGTAGTTAAAGCAGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCTTGTGGGGTGGATGATATGACCAAGTTGGCTTACTTGCATGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTGAACCCTTTTATAAGGTTACCTCATCTTTATAATAGCTACATGATGGCTCAATATAAAGGGGCTGCATTCGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACTGAAAGTACAAAGTTGCTTATGCGTTATCTTGCCTATATGGGAGGGAAAGCTGCTGCCGAGGGAAGGTCTGTTGAGCAGAAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCGAAGACAGTTCGGAACAACAACTCAAGTCGATTTGGTAAGTTCGTGGAGATCCAATTTGACCAAAGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCTGATCCAGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAATCCAAAAACTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGAAACAAGAAAAGCGATGGAAGTTGTTGGAATAAGTTCGGATGAGCAGGATGGAATTTTTCGTGTTGTGGCTGCAATTCTTCATCTCGGAAACATTGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCTAAAGATGAAAAATCTTGGTTTCATCTTAGAACTGCTGCCGAGCTTTTCATGTGTGATGAAAAGGCCCTGGAAGATTCTCTCTGCAAGCGTGTGATTGTCACTCGTGATGAAAATATCACAAAGTGGCTGGATCCAGATTCTGCAGCCCTTAGCAGAGATGCTCTGGCAAAAATTGTTTACTCTAGGTTGTTTGATTGGCTGGTGGACAAAATTAATAATTCAATTGGTCAAGACCCCGAATCAAAGTTCTTGATTGGAGTGTTGGATATCTACGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAGAAACTTCAGCAACATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTACACAAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATATCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAAACATTCAAAAATCATAAACGATTCAGCAAACCAAAATTAGCCCGTAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGACTACGTTGTTGCTGAACATCAAGCGCTCTTGTGTGCTTCCAAATCCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCGAAGTTCTCATCCATAGGTTCTCGTTTCAAGCTTCAATTGGTAGCATTGCTGGAAACTCTAAGTGCTACTGAGCCCCATTACATTCGATGTGTAAAACCCAATAATCTTCTGAAGCCTGCTATCTTTGAGAATAAAAATATATTACAACAACTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTGAAGGATACCAGATCGGTAAGACAAAGGTCTTTCTTAGAGCTGGTCAGATGGCCGAACTTGATGCGCTCAGGACAGAGATCTTAGGGAGATCAGCAAGTATTATTCAACGAAAAGTTCGTTCTTATTTGGCACGTAGAAGTTTTGTGGTTCTTCGGAGGTCAGCTATACATCTACAATCTGCATGTAGAGGACAACTTGCTCGACATGTATTTGAGGTCAAGAGGAGAGAAGCTTCTTCTATAATGATTCAAAGGAATTTGCGTATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTATTTCCATTCAAACTGGAATGCGTGGAATGGCTTCTCGCAATGAGCTACGCACCAGAAGGCGGTCTAAAGCAGCAATTATTATCCAGAGCTATTGTCGTAGATATTTGGCTCAGCTGCATTATAAGAAGTTAAAGAAAGCAACAATCACCACTCAATCGGCATGGAGAGCAAAACTTGCTCGTATGGAACTACGAAAACTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCTAAAAATAAATTGGAGAAGCAAGTTGAAGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCAACTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAAGCTGCAGATATTATTCCGATTGTGAAGGAGGTTCCAGTTGTTGATAATGCACTGATTGAGAAAATTTCTAATGAAAATGAAAAACTCAAGGCGTTGGTAAGTTCACTAGAAAATAAAATTGGTGAAACAGAGAAAAAATATGAAGAGGCGAATAGAGTCAGTGAAGAAAGGTTGAAGCAAGCATCGGAGGCAGAAACAAAAATTATTCAACTAAAGACTGCAATGCAGAGGCTTGAAAAAAAATACTCAAATATTGAATTTGAAAATCAAAATCTTCGGCAGCAGACCCTCCTGAAAACTCCCGTAAAAAGAATGGCTGACCATCTTCCAATTGCAGTAGCAGAGAAAATGGAGAATGGTAACCATTTAACTGAAGATAACAGAACTGATGAGCAGTTTGTGACACCCGTGAAAGCACTGATGAGAATTAGCTCAGAATCTGACATTAAGTTGAGTAGATCACATTTTGAAAATCATCAAGAGAATGTTGATGCTCTTGTCAATTGTGTCATGAATAACATTGGGTTCAGTAATGGGAAGCCTATTGCTGCATTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTTGAAGCTGAAAAGACAAGTGTATTTGATCGCCTAATTCAGATGATTGGGTCTGCAATTGAGAATCAAGATAACAATGATCATATGGCCTATTGGTTGTCAAACACATCCTCACTACTATTCTTGCTTCAACGAAGCTTGAAAGCTGCTGGTGCACCCCGAAAACCGCCACCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTCCGTTCGTCACCTTCTTCCAACAATCTTGGATCATCTCTTAAGGTAGTACGCCAAGTGGAAGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGTTGACAGCATACGTCGAAAAAATATTTGGAATTGTCCGAGATAACTTGAAGAAGGAATTGACATCATTGCTTTCCTTGTGCATCCAAGTACCAAGAACATCAAAAGGTGTATTAAGATCCGGAAGATCATTTGGCAAAGATACTCACACAAATTACTGGCAGAGCATCATAGAAAGCCTTAACATGCTTCTCTGTACACTGAAAGAAAATTTTGTTCCGCAAATACTTATCCAGAATATCTTTCTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTTCGTCGAGAATGTTGCACATTCAGCAATGGAGAATACGTAAAATCGGGGTTAGCTGAGTTGGAGCTCTGGTCTTGTCAAGCGAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAGTACAGAATATCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGACAACTATAACACTCGAAGCGTGTCGCCTGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAATCCAGTTAGCAGTTCCTTTCTATTGGATGACAATTCCAGCATCCCCTTCTCGGTTGAGGACCTCTCGAACTCACAGCAAGAGAAAGATTTCTCCGGCGTGAAGCCCGCCGACGAACTACTTGAGAGCCCAGCCTTCCAATTTTTACACGAGTGA | 4527 | 40.36 | MASTTGLVVGSLVWLEDSEEAWIEGKVLEIRGEEIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFIRLPHLYNSYMMAQYKGAAFGELSPHPFAVADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGKAAAEGRSVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPKTFHYLNQSNCYELDGIDDAKEYIETRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDENITKWLDPDSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLCASKSSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVALLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLEGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVVLRRSAIHLQSACRGQLARHVFEVKRREASSIMIQRNLRMHLCRKAYKEKYSSAISIQTGMRGMASRNELRTRRRSKAAIIIQSYCRRYLAQLHYKKLKKATITTQSAWRAKLARMELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSTLQDMQLQLKETKAMFEKEREAAKKAADIIPIVKEVPVVDNALIEKISNENEKLKALVSSLENKIGETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEKKYSNIEFENQNLRQQTLLKTPVKRMADHLPIAVAEKMENGNHLTEDNRTDEQFVTPVKALMRISSESDIKLSRSHFENHQENVDALVNCVMNNIGFSNGKPIAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHMAYWLSNTSSLLFLLQRSLKAAGAPRKPPPSTSLFGRMTMGFRSSPSSNNLGSSLKVVRQVEAKYPALLFKQQLTAYVEKIFGIVRDNLKKELTSLLSLCIQVPRTSKGVLRSGRSFGKDTHTNYWQSIIESLNMLLCTLKENFVPQILIQNIFLQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWSCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNPVSSSFLLDDNSSIPFSVEDLSNSQQEKDFSGVKPADELLESPAFQFLHE | 1508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1561268 | 1579133 | + | Sed0000280.1 | Sed07g0182 | 719046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g0182 | 1508 | FunFam | unconventional myosin-Va | 833 | 881 | - | - | |
| Sed07g0182 | 1508 | CDD | MyosinXI_CBD | 1110 | 1477 | IPR037975 | GO:0007015(InterPro) | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 783 | 812 | - | - | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 737 | 761 | - | - | |
| Sed07g0182 | 1508 | FunFam | Class V myosin | 439 | 585 | - | - | |
| Sed07g0182 | 1508 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 806 | 835 | - | - | |
| Sed07g0182 | 1508 | PANTHER | MYOSIN | 825 | 1453 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed07g0182 | 1508 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Sed07g0182 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 35 | 785 | IPR027417 | - | |
| Sed07g0182 | 1508 | Coils | Coil | 972 | 1048 | - | - | |
| Sed07g0182 | 1508 | Pfam | Myosin head (motor domain) | 64 | 720 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | Pfam | DIL domain | 1330 | 1434 | IPR002710 | - | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 854 | 883 | - | - | |
| Sed07g0182 | 1508 | FunFam | Myosin XI D | 735 | 784 | - | - | |
| Sed07g0182 | 1508 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| Sed07g0182 | 1508 | SMART | MYSc_2a | 57 | 733 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | Coils | Coil | 877 | 950 | - | - | |
| Sed07g0182 | 1508 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | FunFam | unconventional myosin-Va | 785 | 832 | - | - | |
| Sed07g0182 | 1508 | Pfam | IQ calmodulin-binding motif | 833 | 852 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | Pfam | IQ calmodulin-binding motif | 785 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | Pfam | IQ calmodulin-binding motif | 737 | 755 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | Pfam | IQ calmodulin-binding motif | 856 | 875 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | Pfam | IQ calmodulin-binding motif | 759 | 778 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | ProSiteProfiles | Dilute domain profile. | 1159 | 1454 | IPR002710 | - | |
| Sed07g0182 | 1508 | Gene3D | - | 252 | 310 | - | - | |
| Sed07g0182 | 1508 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 758 | 787 | - | - | |
| Sed07g0182 | 1508 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | SMART | iq_5 | 853 | 875 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g0182 | 1508 | ProSiteProfiles | IQ motif profile. | 831 | 860 | - | - | |
| Sed07g0182 | 1508 | SMART | DIL_2 | 1329 | 1436 | IPR002710 | - | |
| Sed07g0182 | 1508 | Gene3D | - | 439 | 623 | - | - | |
| Sed07g0182 | 1508 | Gene3D | - | 666 | 733 | - | - | |
| Sed07g0182 | 1508 | FunFam | Myosin 2 | 312 | 427 | - | - | |
| Sed07g0182 | 1508 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Sed07g0182 | 1508 | Gene3D | - | 735 | 783 | - | - | |
| Sed07g0182 | 1508 | Gene3D | - | 833 | 882 | - | - | |
| Sed07g0182 | 1508 | Gene3D | - | 784 | 832 | - | - | |
| Sed07g0182 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 784 | 883 | IPR027417 | - | |
| Sed07g0182 | 1508 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0182 | Sed-Chr7:1561268 | Sed12g0428 | Sed-Chr12:2572455 | 0.00E+00 | dispersed | |
| Sed02g1451 | Sed-Chr2:50564742 | Sed07g0182 | Sed-Chr7:1561268 | 0.00E+00 | wgd | |
| Sed07g0182 | Sed-Chr7:1561268 | Sed09g0829 | Sed-Chr9:25453915 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g0182 | K10357 | - | csv:101208630 | 2788.45 |