Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0201 ATGGCGATTTTGAAGCTTTTGCCTCTCTGCATTTCATTCTTCTTGTTGTTCTTCATATCCCCTTATGTACAAGGTGATGATTCCTTGCATTTCTCTTCTGATGTTCAACTTCTTTTGGGAAAGATTAGAGCTTCACTTGAAGGTGAATCTCAAAACTTGCTTTTATTTTCATGGAATTACTCTTTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTGTTTTCTAGTGGAACTCCTTTGCTTTGTAGTGACTCTTCTTCTCCACAATGGTCTAATCTCACTCTGTTCAAAGACCCTTCTCTCCATGTTCTCTCTTTGCAGCTTCCTTCTGCTAATCTCACTGGTTCTTTGCCTAAGGAGCTTGGTGAGTTCACTATGCTTCAAAGTCTCTATTTGAGTGTTAACTCTTTGACTGGAACTATCCCTCTTGAACTTGGTTATAGCTCTTCTCTTTCTGATATTGATTTGAGTAGTAATCTCTTGACTGGTGCTCTTCCACCATCTATTTGGAATCTTTGTGATAAACTTGTTTCTGTTAAGCTTCATGGAAATTTGTTATCTGGGTCGTTGCCGGAACCGGCTTTACCGGATTCCACCTGCAAGAGTTTGGTGGTTTTGGATTTGGGGAACAATCAGATTTCTGGTTCTTTCCCTGAATTCATTACTAGGTTTCAGGGTTTGAAGGAGCTTGATCTTGGGAGGAATTTGTTGTCTGGACAAATCCCTCAGAGGTTAGGGGAGTTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAACTTCAGTGGGGTATTGCCTGCTTTTGGGAAATCAAAGTTTGGTGTGGAAGCTTTTGAAGGGAACAATGTTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTTCAGGACCTTCTCATTTGAGTTCAGGTGCCATTGCTGGGCTTGTTATTGGATTTATGACTGGGACTGTGGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGGGTAGAAGTGAGAGTGAAGATGAGATTGAGGAAGCAGAAGATGAAGAAAACGGAGGCGGTATTGGCGGTGGTGGGGAAGGGAAGCTCATTTTGTTTCAGGGTGGTGAGCATTTGACATTGGATGATGTGTTGAATGCTACAGGGCAGGTAATGGAGAAAACAAGCTATGGAACTATATATAAGGCAAAGCTTGCTGATGGAGGTACCATTGCTTTGAGACTTCTAAGGGAAGGTAGTTGCAAAGACAGAAACTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATCCGCCATGAGAATTTGATTTCTTTGAGAGCTTTTTATCAGGGAAAGAGAGGAGAAAAGCTCCTCATTTATGACTATTTGCCTATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAGCCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCATTAGGCATCGCTCGTGGACTAGCCCATCTTCACACCGGTCTCGAAGTCCCCATTACACACGGCAACGTGAGATCAAAAAACGTGCTAGTGGACGACTTCTTTGCAGCAAGACTGACCGAGTTTGGGCTCGACAAGATAATGATCCCATCGGTAGCTGACGAAATCGTATCACTTGCAAAGTCGGACGGATACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAGCTCAAGAACAGATGTGTATGCATTTGGAATCCTGCTATTAGAAATTCTGATTGGAAAGAAGCCAGGGAAGAGTGGAAGAAGTGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTTGCAGTTCTTGAGGAAACAACAATGGAGGTTTTCGATGTCGAAGTCTTGAAAGGGATTAGAAGCCCCATGGAAGATGGAGTTGTTCAAGCATTGAAGCTTGCAATGGGCTGTTGTGCTCCAGTGGCTTCAGTAAGACCTACCATGGATGAAGTTGTGAAGCAATTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAAAATGGTACCCCATTTTGA 2031 42.89 MAILKLLPLCISFFLLFFISPYVQGDDSLHFSSDVQLLLGKIRASLEGESQNLLLFSWNYSLPLCQWRGLKWVFSSGTPLLCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSVNSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCDKLVSVKLHGNLLSGSLPEPALPDSTCKSLVVLDLGNNQISGSFPEFITRFQGLKELDLGRNLLSGQIPQRLGELELEKLNLSNNNFSGVLPAFGKSKFGVEAFEGNNVGLCGEPLKSCSGPSHLSSGAIAGLVIGFMTGTVVLASLLIGYMQNKKKKGRSESEDEIEEAEDEENGGGIGGGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLISLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKIMIPSVADEIVSLAKSDGYKAPELQRMKKCSSRTDVYAFGILLLEILIGKKPGKSGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPTETRSENGTPF 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1717943 1720650 + Sed0026775.1 Sed07g0201 719065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0201 676 MobiDBLite consensus disorder prediction 655 676 - -
Sed07g0201 676 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 190 - -
Sed07g0201 676 SUPERFAMILY Protein kinase-like (PK-like) 381 652 IPR011009 -
Sed07g0201 676 Pfam Protein tyrosine and serine/threonine kinase 380 651 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0201 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 105 662 IPR052451 -
Sed07g0201 676 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515(InterPro)
Sed07g0201 676 Gene3D Transferase(Phosphotransferase) domain 1 454 669 - -
Sed07g0201 676 MobiDBLite consensus disorder prediction 331 354 - -
Sed07g0201 676 MobiDBLite consensus disorder prediction 657 676 - -
Sed07g0201 676 Gene3D Ribonuclease Inhibitor 33 194 IPR032675 -
Sed07g0201 676 Gene3D Ribonuclease Inhibitor 195 294 IPR032675 -
Sed07g0201 676 Coils Coil 326 346 - -
Sed07g0201 676 FunFam Leucine-rich repeat receptor-like protein kinase 200 292 - -
Sed07g0201 676 Gene3D Phosphorylase Kinase; domain 1 362 452 - -
Sed07g0201 676 Pfam Leucine Rich Repeat 127 146 IPR001611 GO:0005515(InterPro)
Sed07g0201 676 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Sed07g0201 676 SUPERFAMILY L domain-like 97 267 - -
Sed07g0201 676 ProSiteProfiles Protein kinase domain profile. 376 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3728 Sed-Chr1:66358454 Sed07g0201 Sed-Chr7:1717943 9.60E-41 dispersed
Sed07g0201 Sed-Chr7:1717943 Sed13g0263 Sed-Chr13:1717854 4.50E-56 dispersed
Sed07g0201 Sed-Chr7:1717943 Sed04g2935 Sed-Chr4:40926212 8.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79419 PF07714 PK_Tyr_Ser-Thr 5.00E-26 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0201 - - - 0.0