Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0253 ATGAACGATGTGAAGAACAAATATCATACTCAGGGCGAAATTCCTGAACTCGATTTTGAGAAATTGGAAGCCGTGAAGGTGCTCGGCCGGGGAGCGAAAGGAGTCGTGTTCTTGGCTCGAAATGCAGATGACGGAGGAGGCGAATGGCTAGCGCTGAAGGTGATTTCGAGAGATTTGATCGAGAGGAAGGCCGAGATCGTGAGTACCGGCGGCGATGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTCTCCGTCTGTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTTGATACTCGGAAAGTTGTTGGCTACGCCATTGATTATTGCAATGGACGAGATCTTAATACTCTCAGGAAGAAACAGACCGAGAAAATGTTCTCCGACGACGTTATCAGATTTTACGCGGCGGAGTTAGTTATGGCATTGGAGTATGTACACAGTTTAGGAATAGTTTACAGAGATTTGAAGCCGGAAAATGTTATGGTTCAACACAACGGCCATGTAATGCTTGTGGATTTTGATCTCTCTACAAGGCTCTCTCAGAAATCTCCTAAATCGTCACCGTCGCCGGAGGTTTTGACGGAGTCTAAATCGGCGATCAAAACAAAGAAGAAGAAGAAGAAGAGAAGAGTCTTTCATTTACATCGATTATGCAACTCCGGCGTTTCGCCGGAGCATACCGACCAACCGGCGGCGGAGAGGCTGGAATCCGAGTCGGAGAAGTCGAACTCGTTCGTCGGAACGGAGGAGTACGTGGCGCCGGAGATCGTCGGCGGGAAGGGGCACGACTTCGCCGTGGACTGGTGGTCACTGGGAGTTGTTCTGTACGAGATGCTGTACGGGACGACGCCGTTTCGAGGATCGAATCGGAAAGAAACGTTCTACCGGATTCTGACGAAGGCGCCGGATCTGTGCGGCGAGGCGACGGCGTTGAGGGATTTGATCAGGCAGTTGCTGGAGAAAGATCCGACGAAGAGGATCGAACTGGAGGAAATCAAGAGCCACGATTTCTTCAGAGGAACTGACTGGCCTTTGGTTCTGGAAATTCCCCGGCCGCCGTCGCTGCCTGAACTGGCGGCGGAGGACATGGATGGAAATAGTCTAATTGATGTGGAGGGCTTTGTCCAAAATTTATTTAGCGGCGAAACGGAGAAGAAGAATTGCGATGAAGGGAAAGGGTTTATTATTCCTACAAATTACACACAGTCTGACATATTTCATGACTTCTGA 1239 49.72 MNDVKNKYHTQGEIPELDFEKLEAVKVLGRGAKGVVFLARNADDGGGEWLALKVISRDLIERKAEIVSTGGDEYRRVCFEREVLRLFRHPLLPRLRGVFDTRKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHNGHVMLVDFDLSTRLSQKSPKSSPSPEVLTESKSAIKTKKKKKKRRVFHLHRLCNSGVSPEHTDQPAAERLESESEKSNSFVGTEEYVAPEIVGGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKAPDLCGEATALRDLIRQLLEKDPTKRIELEEIKSHDFFRGTDWPLVLEIPRPPSLPELAAEDMDGNSLIDVEGFVQNLFSGETEKKNCDEGKGFIIPTNYTQSDIFHDF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2016275 2017927 - Sed0010406.1 Sed07g0253 719117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0253 412 FunFam Serine/threonine-protein kinase OXI1 116 184 - -
Sed07g0253 412 SUPERFAMILY Protein kinase-like (PK-like) 11 364 IPR011009 -
Sed07g0253 412 Gene3D Phosphorylase Kinase; domain 1 22 115 - -
Sed07g0253 412 FunFam Serine/threonine-protein kinase OXI1 243 360 - -
Sed07g0253 412 ProSiteProfiles Protein kinase domain profile. 22 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0253 412 MobiDBLite consensus disorder prediction 184 243 - -
Sed07g0253 412 Gene3D Transferase(Phosphotransferase) domain 1 237 360 - -
Sed07g0253 412 Gene3D Transferase(Phosphotransferase) domain 1 116 186 - -
Sed07g0253 412 SMART serkin_6 22 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0253 412 PANTHER FLIPPASE KINASE 1-RELATED 13 364 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed07g0253 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0253 412 MobiDBLite consensus disorder prediction 203 218 - -
Sed07g0253 412 MobiDBLite consensus disorder prediction 184 199 - -
Sed07g0253 412 Pfam Protein kinase domain 235 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0253 412 Pfam Protein kinase domain 24 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0253 Sed-Chr7:2016275 Sed14g0203 Sed-Chr14:2300808 2.40E-60 dispersed
Sed05g1123 Sed-Chr5:10966547 Sed07g0253 Sed-Chr7:2016275 8.10E-77 transposed
Sed07g0253 Sed-Chr7:2016275 Sed09g0994 Sed-Chr9:32525343 9.40E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79421 PF00069 Pkinase 1.30E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0253 K20714 - csv:101223223 598.586