Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0260 | ATGGAAAACCAATTCTTCCTCAACACTACTGGAATCTCTCAACCTCCAATGCATTTCAACTCCAATCCAAACATGGCGGCCTGGCACAGCTCCTTTTCGTCCGCCATGGATGTTCATCTTCAAGTACCAGAGCTCAACAACCACTGTTCTTCTTCCTCTCACCAATCTCCTCTGGATCAAACCTTCCAATTCGATTCGGCTCTCACTTCCATGGTTTCATCACCCGCCGCGTCCAATTCCAACCTAACGAACGAGAGCTTCGCGATCAGAGAGCTCATCGGAAAATCCGACCGGAGGATATTGGAATTGAACTCTTCTTCCTCGACCGTGGCGGAGTTTTCGCCCGATCCTGGATTTGCAGAGCGCGCTGCTAGGTTTTCGTGTTTCGGAAGTAGGAGCTTCAATGGCCGTCAATTGACGAACGAATTCGGTAATTCCAGATCTCCTCTCGGAATCGCGAACGAGAAATTGAGCCGAGTTTCGAGTACTCTGTCGCTCAATGCCCTAGGATCTGAGATTGATCAGCAGGAACACACGAACGATTTCTCATCGCTGGAAGACGAATCGTCTCTCTCGAATCCGGACAAGGCGATTTCGAATCCACGGAAGAGAAAGGCGATCGCGAAACCTAAACTCAAAGAACCGGTGGCTGAAGCTTCCATGGAGGGAAGTCCGAAGAAACTCAAATCAGTTGAAACGAAGGAAAACGTGAAAACGGAAGAGGATTCGAAGAAATCTGATGAGAATTTAGCAGAAGAGAAGGAAACGAAGGCGAATTCGAAGCTTCCTGAACCTCCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCAACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTTTAATGCTGGATGAAATCATTAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTAAACATGGATTCTCTTATCTCAAAACAAGTAATTTTTCCTCTTTCTTTTTTGTAA | 1101 | 45.41 | MENQFFLNTTGISQPPMHFNSNPNMAAWHSSFSSAMDVHLQVPELNNHCSSSSHQSPLDQTFQFDSALTSMVSSPAASNSNLTNESFAIRELIGKSDRRILELNSSSSTVAEFSPDPGFAERAARFSCFGSRSFNGRQLTNEFGNSRSPLGIANEKLSRVSSTLSLNALGSEIDQQEHTNDFSSLEDESSLSNPDKAISNPRKRKAIAKPKLKEPVAEASMEGSPKKLKSVETKENVKTEEDSKKSDENLAEEKETKANSKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDLNMDSLISKQVIFPLSFL | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2094106 | 2097100 | + | Sed0023888.4 | Sed07g0260 | 719124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0260 | 366 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 110 | 356 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Sed07g0260 | 366 | Pfam | Helix-loop-helix DNA-binding domain | 282 | 329 | IPR011598 | GO:0046983(InterPro) | |
Sed07g0260 | 366 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 278 | 328 | IPR011598 | GO:0046983(InterPro) | |
Sed07g0260 | 366 | FunFam | Basic helix-loop-helix transcription factor | 275 | 348 | - | - | |
Sed07g0260 | 366 | CDD | bHLH_AtBPE_like | 268 | 354 | - | - | |
Sed07g0260 | 366 | Gene3D | - | 275 | 348 | IPR036638 | GO:0046983(InterPro) | |
Sed07g0260 | 366 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 276 | 343 | IPR036638 | GO:0046983(InterPro) | |
Sed07g0260 | 366 | SMART | finulus | 284 | 334 | IPR011598 | GO:0046983(InterPro) | |
Sed07g0260 | 366 | MobiDBLite | consensus disorder prediction | 171 | 266 | - | - | |
Sed07g0260 | 366 | MobiDBLite | consensus disorder prediction | 225 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0258 | Sed-Chr7:2094106 | Sed07g0260 | Sed-Chr7:2094106 | 7.30E-193 | dispersed | |
Sed07g0260 | Sed-Chr7:2094106 | Sed09g0996 | Sed-Chr9:32673742 | 4.80E-105 | dispersed | |
Sed07g0259 | Sed-Chr7:2094106 | Sed07g0260 | Sed-Chr7:2094106 | 1.60E-196 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38991 | PF00010 | HLH | 2.50E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0260 | - | - | - | 0.0 |