Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0260 ATGGAAAACCAATTCTTCCTCAACACTACTGGAATCTCTCAACCTCCAATGCATTTCAACTCCAATCCAAACATGGCGGCCTGGCACAGCTCCTTTTCGTCCGCCATGGATGTTCATCTTCAAGTACCAGAGCTCAACAACCACTGTTCTTCTTCCTCTCACCAATCTCCTCTGGATCAAACCTTCCAATTCGATTCGGCTCTCACTTCCATGGTTTCATCACCCGCCGCGTCCAATTCCAACCTAACGAACGAGAGCTTCGCGATCAGAGAGCTCATCGGAAAATCCGACCGGAGGATATTGGAATTGAACTCTTCTTCCTCGACCGTGGCGGAGTTTTCGCCCGATCCTGGATTTGCAGAGCGCGCTGCTAGGTTTTCGTGTTTCGGAAGTAGGAGCTTCAATGGCCGTCAATTGACGAACGAATTCGGTAATTCCAGATCTCCTCTCGGAATCGCGAACGAGAAATTGAGCCGAGTTTCGAGTACTCTGTCGCTCAATGCCCTAGGATCTGAGATTGATCAGCAGGAACACACGAACGATTTCTCATCGCTGGAAGACGAATCGTCTCTCTCGAATCCGGACAAGGCGATTTCGAATCCACGGAAGAGAAAGGCGATCGCGAAACCTAAACTCAAAGAACCGGTGGCTGAAGCTTCCATGGAGGGAAGTCCGAAGAAACTCAAATCAGTTGAAACGAAGGAAAACGTGAAAACGGAAGAGGATTCGAAGAAATCTGATGAGAATTTAGCAGAAGAGAAGGAAACGAAGGCGAATTCGAAGCTTCCTGAACCTCCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCAACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTAACTGGAAAAGCTTTAATGCTGGATGAAATCATTAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTAAACATGGATTCTCTTATCTCAAAACAAGTAATTTTTCCTCTTTCTTTTTTGTAA 1101 45.41 MENQFFLNTTGISQPPMHFNSNPNMAAWHSSFSSAMDVHLQVPELNNHCSSSSHQSPLDQTFQFDSALTSMVSSPAASNSNLTNESFAIRELIGKSDRRILELNSSSSTVAEFSPDPGFAERAARFSCFGSRSFNGRQLTNEFGNSRSPLGIANEKLSRVSSTLSLNALGSEIDQQEHTNDFSSLEDESSLSNPDKAISNPRKRKAIAKPKLKEPVAEASMEGSPKKLKSVETKENVKTEEDSKKSDENLAEEKETKANSKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDLNMDSLISKQVIFPLSFL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2094106 2097100 + Sed0023888.4 Sed07g0260 719124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0260 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 110 356 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed07g0260 366 Pfam Helix-loop-helix DNA-binding domain 282 329 IPR011598 GO:0046983(InterPro)
Sed07g0260 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 328 IPR011598 GO:0046983(InterPro)
Sed07g0260 366 FunFam Basic helix-loop-helix transcription factor 275 348 - -
Sed07g0260 366 CDD bHLH_AtBPE_like 268 354 - -
Sed07g0260 366 Gene3D - 275 348 IPR036638 GO:0046983(InterPro)
Sed07g0260 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 343 IPR036638 GO:0046983(InterPro)
Sed07g0260 366 SMART finulus 284 334 IPR011598 GO:0046983(InterPro)
Sed07g0260 366 MobiDBLite consensus disorder prediction 171 266 - -
Sed07g0260 366 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0258 Sed-Chr7:2094106 Sed07g0260 Sed-Chr7:2094106 7.30E-193 dispersed
Sed07g0260 Sed-Chr7:2094106 Sed09g0996 Sed-Chr9:32673742 4.80E-105 dispersed
Sed07g0259 Sed-Chr7:2094106 Sed07g0260 Sed-Chr7:2094106 1.60E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38991 PF00010 HLH 2.50E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0260 - - - 0.0