Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0261 ATGTCTCGAACGCCGAATCATGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAGGAACAATGGCGAACTCTCAGTGGAGAAGTTCGATAACTTCTCCACCTCGCCGGCATTTCTATCCGTGGAGATCCCGGCAGATCGGACGGCGGATGAGGACCGGGCGAGGACCAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAGTTCCAGCAGATTGCTGGTTCTTTCGCTTCCATTACCAATGGCGTCGTTTATCTCATCCGAACCGCCAATCGTCGGATCTCGTCGCCCGATTCGCCTGCTGATTCGGCCTCGTCTCGGCTCTATAGGGTTATCAAAGTTTTCTTGATTGTAGTGATTCTGTTGCTTGTTTTTGAGCTTGTGGCCTACTTCAATGGCTGGCATTTTAGTCCCCCTTCTGTTAGTTTGGCTTCGGCGGAGGTGCTTGGAATGATAGGGTTTATTTATGCTCATTGGCTTGGGATTAGGACATTTTACTTGGCTCCACCGTTGCAGATCTTGATCAATGTATGCATTGTGTTGTTCCTGATCCAGTCTGTGGATCGTTTGGTTTTGATGCTGGGGTGTTTTTGGATCAAATTCCGGGGATTGAAGCCCGTGGCGCCATTTGAGTACTCGGCAGCCGGCCATGAGAATGGTGTTATTCCTGAGGATTATCCAATGGTGTTGGTACAGATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGACAAAATGCTTGTGCAAGTTTTAGATGATTCTGATGAGCTAGATGTACAACAACTTATCAAAGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGCATATTGTATCGACACCGCCTCATACGTACAGGCTACAAGGCAGGGAATCTCAAATCGGCTATGGGGTGCGATTATGTAAAAGATTTTGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTCAAGGGGAATGATGAACTTGCATTGGTCCAAACGAGGTGGTCATTTGTGAACAAGGACGAAAACTTGCTCACAAGATTGCAGAACATAAATTTAGCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTTTGGAGAATTAAAGCTCTGGAAGATTGTGGGGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCTGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATCTATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCATACAAGAAACAACAACACCGCTGGCATTCAGGCCCAATGCAGTTATTTCGTTTGTGCTTCTCTGATATACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGTTAATTTGATTTTTCTTTTCTTCCTCTTGAGAAAGCTCGTCCTTCCCTTTTATTCCTTTACATTATTTTGCATAATTCTCCCCTTGACCATGTTCCTACCAGAAGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGACTCATGTCCATCTTAAATATTCTCCCTTCGCCGCAGTCGTTTCCGTTTATCGTCCCCTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCTATGATTTTGGGGTTATTCCGCTTTAGAAGTTCTTATGAATGGATAGTAACGAAAAAACTGGGACGATCATCCGAAAACGATCTTGTTGCTTATGAAAAAGAACAAGAACCTCTAGTTGAAAGTACAACTCTTCATCGATCGTCCTCAGAATCAGGTCTTCATGAACTGACCAAGCTCGAGATATCGAAAAAAGCAGGGAAAAGCAGAAGAAATCGGCTGTACAGGAAGGAATTGGCTCTTGCAATCATTTTGTTAACTGCGTCCGCTAGAAGTTTGTTATCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAAGGTATCACTTTTCTAGTAGTCGGTCTCGATTTAATTGGAGAGCAGGTCAGTTAA 2073 43.66 MSRTPNHEFQEWWNKQRERNNGELSVEKFDNFSTSPAFLSVEIPADRTADEDRARTRSARQISWVWLLKFQQIAGSFASITNGVVYLIRTANRRISSPDSPADSASSRLYRVIKVFLIVVILLLVFELVAYFNGWHFSPPSVSLASAEVLGMIGFIYAHWLGIRTFYLAPPLQILINVCIVLFLIQSVDRLVLMLGCFWIKFRGLKPVAPFEYSAAGHENGVIPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDFEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLAFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWKKKVNLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGLMSILNILPSPQSFPFIVPYLLFENTMSVTKFNAMILGLFRFRSSYEWIVTKKLGRSSENDLVAYEKEQEPLVESTTLHRSSSESGLHELTKLEISKKAGKSRRNRLYRKELALAIILLTASARSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2107190 2112767 + Sed0022145.1 Sed07g0261 719125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0261 690 Pfam Glycosyl transferase family group 2 322 524 IPR001173 -
Sed07g0261 690 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 446 IPR029044 -
Sed07g0261 690 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 154 689 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed07g0261 690 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 506 IPR029044 -
Sed07g0261 690 FunFam probable xyloglucan glycosyltransferase 5 221 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0261 Sed-Chr7:2107190 Sed11g1870 Sed-Chr11:33295111 1.00E-244 dispersed
Sed07g0261 Sed-Chr7:2107190 Sed09g0998 Sed-Chr9:32853630 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36