Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0262 ATGGATGATGATTTTGATATCCCTGCGGCGGCTGACATGAACGAGGATTTGGATCTTCCAGATGAAACCGTTGCTCTCAAAGTTGGAGAGGAGAAAGAAATTGGGAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAGGGTGAAGGATGGGTCACTCCTGAAAATGGCAATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTCGATTCCAGCCGTGATCGTGGAACCCCATTTAAGTTCACTCTTGGCCAAGGGCAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAAAGTGAAAAAGCCCTTTTTACCATTCCTTCTGAGCTTGCCTATGGTGAATCTGGCTCGCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTCGATGTCGAGCTACTATCTTGGTCAAGTGTGAAAGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGAACAAATGGGAAAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACCGCTGTAAAAACCATGAAGCTAGGAGAAAAGGCGCTCCTCTCGGTGAAACCACAATATGGGTTTGGGGAGAAAGGTAAATCAGCCTCTAGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTAGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTTTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGAAGGAGCTGTTGTTAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCACAATATTCTTGAAGAAGGGACATGATGATGAACAAGTGATTGATGGCCTCGACAAAGCTGTTGCAACAATGAAGAAAGGCGAGACAGCCCTGCTGACAATATCAACAGAGTATGCTTTTGGTTCATCCGAGTCACAACAGGAGTCAGCCGTAGTTCCTCCAAACTCGACTGTGTATTATGAAGTTGAACTGGTGGCTTTTGACAAGGAAAAAGAATCATGGGATATGAGTAACCAGGAAAAGATTGAAGCTGCTGGCAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGGAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATGTGACTCTTCATTAAGCGAAGAAGAGAAAAAGCAAGCAAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAAGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAAAGTTCAAATGGTAAGGCTCTCTATAGAAGAGCTCAAGCATACATCCAACTAGCTGATTTGGATTTGGCTGAATTCGACATCAAGAAAGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGATGAAGGAATACAACAAAAAAGATGCCAAGTTCTACGGCAACATGTTTGCTAAAATGAAGAAATTAGAATCGTTTGACAAAAATAAAGAATGA 1608 41.67 MDDDFDIPAAADMNEDLDLPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGNEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPSELAYGESGSPPTIPPSATLQFDVELLSWSSVKDICKDGGIFKKILTEGNKWENPKDLDEVLVNFEAKLEDGTLVAKADGVEFTAVKTMKLGEKALLSVKPQYGFGEKGKSASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNEGAVVKVKLIGKLGDGTIFLKKGHDDEQVIDGLDKAVATMKKGETALLTISTEYAFGSSESQQESAVVPPNSTVYYEVELVAFDKEKESWDMSNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIECDSSLSEEEKKQAKALKVACNLNNAACKLKLKLYKEAEKLCTKVLELESSNGKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKMKEYNKKDAKFYGNMFAKMKKLESFDKNKE 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2113099 2122781 - Sed0025920.1 Sed07g0262 719126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0262 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 156 249 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 Gene3D - 249 364 IPR046357 GO:0003755(InterPro)
Sed07g0262 535 SUPERFAMILY FKBP-like 32 148 - -
Sed07g0262 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 277 359 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 271 356 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 245 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 FunFam Peptidylprolyl isomerase 250 361 - -
Sed07g0262 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755(InterPro)
Sed07g0262 535 SUPERFAMILY TPR-like 364 524 IPR011990 GO:0005515(InterPro)
Sed07g0262 535 SUPERFAMILY FKBP-like 148 252 - -
Sed07g0262 535 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515(InterPro)
Sed07g0262 535 Coils Coil 492 512 - -
Sed07g0262 535 SMART tpr_5 425 458 IPR019734 GO:0005515(InterPro)
Sed07g0262 535 SMART tpr_5 459 492 IPR019734 GO:0005515(InterPro)
Sed07g0262 535 SMART tpr_5 376 409 IPR019734 GO:0005515(InterPro)
Sed07g0262 535 Gene3D - 148 248 IPR046357 GO:0003755(InterPro)
Sed07g0262 535 SUPERFAMILY FKBP-like 252 376 - -
Sed07g0262 535 Gene3D Tetratricopeptide repeat domain 365 519 IPR011990 GO:0005515(InterPro)
Sed07g0262 535 Gene3D - 29 147 IPR046357 GO:0003755(InterPro)
Sed07g0262 535 Pfam Tetratricopeptide repeat 460 492 IPR019734 GO:0005515(InterPro)
Sed07g0262 535 FunFam Peptidylprolyl isomerase 364 519 - -
Sed07g0262 535 FunFam Peptidylprolyl isomerase 29 147 - -
Sed07g0262 535 PANTHER PEPTIDYLPROLYL ISOMERASE 31 142 IPR050754 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2534 Sed-Chr4:38176666 Sed07g0262 Sed-Chr7:2113099 2.10E-31 dispersed
Sed05g1336 Sed-Chr5:26074882 Sed07g0262 Sed-Chr7:2113099 6.10E-31 dispersed
Sed07g0262 Sed-Chr7:2113099 Sed11g2219 Sed-Chr11:35748045 4.50E-19 dispersed
Sed12g0549 Sed-Chr12:3353036 Sed07g0262 Sed-Chr7:2113099 1.40E-09 transposed
Sed07g0262 Sed-Chr7:2113099 Sed09g0999 Sed-Chr9:32865455 7.20E-275 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0262 K09571 - csv:101214513 904.434