Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0338 | ATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGA | 447 | 49.44 | MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC | 148 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2593575 | 2594163 | + | Sed0012032.1 | Sed07g0338 | 719202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0338 | 148 | FunFam | Nuclear transcription factor Y subunit B-3 | 40 | 148 | - | - | |
Sed07g0338 | 148 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 51 | 115 | IPR003958 | - | |
Sed07g0338 | 148 | SUPERFAMILY | Histone-fold | 48 | 144 | IPR009072 | GO:0046982(InterPro) | |
Sed07g0338 | 148 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 82 | 98 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed07g0338 | 148 | MobiDBLite | consensus disorder prediction | 19 | 43 | - | - | |
Sed07g0338 | 148 | Gene3D | Histone, subunit A | 43 | 147 | IPR009072 | GO:0046982(InterPro) | |
Sed07g0338 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 117 | 135 | - | - | |
Sed07g0338 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Sed07g0338 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
Sed07g0338 | 148 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 39 | 143 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3965 | Sed-Chr4:47580651 | Sed07g0338 | Sed-Chr7:2593575 | 1.30E-26 | dispersed | |
Sed07g0338 | Sed-Chr7:2593575 | Sed08g2902 | Sed-Chr8:40048530 | 4.10E-39 | dispersed | |
Sed07g0338 | Sed-Chr7:2593575 | Sed09g1217 | Sed-Chr9:36413865 | 4.60E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38994 | PF00808 | CBFD_NFYB_HMF | 3.20E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0338 | K08065 | - | csv:101204763 | 236.113 |