Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0338 ATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGA 447 49.44 MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2593575 2594163 + Sed0012032.1 Sed07g0338 719202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0338 148 FunFam Nuclear transcription factor Y subunit B-3 40 148 - -
Sed07g0338 148 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Sed07g0338 148 SUPERFAMILY Histone-fold 48 144 IPR009072 GO:0046982(InterPro)
Sed07g0338 148 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g0338 148 MobiDBLite consensus disorder prediction 19 43 - -
Sed07g0338 148 Gene3D Histone, subunit A 43 147 IPR009072 GO:0046982(InterPro)
Sed07g0338 148 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Sed07g0338 148 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sed07g0338 148 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sed07g0338 148 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 39 143 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3965 Sed-Chr4:47580651 Sed07g0338 Sed-Chr7:2593575 1.30E-26 dispersed
Sed07g0338 Sed-Chr7:2593575 Sed08g2902 Sed-Chr8:40048530 4.10E-39 dispersed
Sed07g0338 Sed-Chr7:2593575 Sed09g1217 Sed-Chr9:36413865 4.60E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38994 PF00808 CBFD_NFYB_HMF 3.20E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0338 K08065 - csv:101204763 236.113