Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0383 ATGAAACCCAAAACCTTAAATCAGTTCGATTCTCCATTTCTTCTTCTTCTTCTCACCGTTTCCTCCCTCTCCGCCGCCGCCGCCGCCGATTGCCCTCTCGACTTCACCGTCCTCCGCCAGTTCTCCCGCTCCGACTTCTCCCACAAATGCCAATACATCCGTCTCGGCCTCCGCCTCGTCCTCTCTCACCACCTCAAACTCACCGGATCCTTCCTCCCTCCGCCCAACTCCTCCGGTTCCTGCTGGAACTCCTACCAGTCCGTCGTCAACGAAGCCTGGCCGGGTTTCGACATCCGGACCTCTTGCGGGTTCCGGACCCGCTGGATCTCCCAGGGCTGTATGAACATCACCACCAAATCTGAGTTCCAGAGAATCGTTCCCAAATCGATTCTCGACGGCGTTTTCGAGAACTGTAATCATTCGCTCGAAAACAATTCCCCGTGTGCCTTGTGTCGGGGTCGCCTCTCCATCGTCCAGGCCTCGGCCTTGTCCGGTTCGTCCACTGGCAATCTCACCGATTGCCAAGCCTATCCCTCCATCTTTGCCGCGGCCTTCGTCACTCGATTCGAGCCCACTGATTCGCGAGCTGCGAAATGCTTGTTCTCGCTGAATCCTCTCTCGGATTCGAACCGGCTGAGTACGGTGGTTTTGGTGGTTTTGATTTGTTGTAGTGTTGGGTTGGCTACGGCAGCGGCCGGTTTCGGGGGGTGGTGTTTGTGGCGAAAGGAGGGGAAATTGAAGGAGAAGGGTAGGATTGGTAGGGTGGAGTTAGGGTTTGGTTCTGGATTGGAGTCTATAAGTGAAAGCACCACGTTGGTGAAGTTTACATTTGATGAAATCAAAAGGGCAACGAGGAATTTCTCTAGAGATAACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGGTTTTATGTGATGATTCTGAAGTTGCAGTGAAGAGGTTCAAGAACTGTTCTGCTGCTGGAGATGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTGTTAGACATGTTAATCTTGTTGCTTTGAGAGGTTATTGTATTGCTACAACTTCATTAGAGGGTCATCAGAGGATGATTGTATGTGATTTGATGAAGAATGGGAGTGTTTATGATCATTTGTTTGAGTATTCTGATAAGAAATTGAGTTGGTCAGTTAGGCAGAAGATTGCTCTTGGCACTGCTAGGGGATTGGCTTATCTCCATCATGGAGCTCAGCCTGCCATTATTCATAGAGATATCAAAGCCAATAACATTCTTTTGGATGAAAATTTTGAACCCAAAGTTGCTGATTTTGGTTTGGCTAAGTTCACTCCAGAAGGAATGACTCATCTGAGCACAAGAGTTGCTGGGACTATGGGGTATGTGGCTCCCGAGTATGCGTTGTACGGTCAGTTGTCGGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTGCTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAAGAGCCCCGATAGCCAGTCGTATTTGGTGACTGATTGGGCTTGGTCTTTGGTGAGGGAACAAAAGGCTATGGATGTTCTTGAAGAAGGCATGCCTAAGCTCGGTTCCCCCGAGGTTGTTGAGAAATATGTATTGATTGGTGTTCTTTGTTCCCATCCCCAGCTCTATGCTAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGACCTCTCTGTTCCTTCAATCCCTGATAGACCCATCCCTCTGGTTGCTGAGATTGATGAAATTGAGAGATCTATGTGTAGAAAAAGCTCATCCCAGCATTCTGGTTCAGTTGGCTTTCATAGTTACACATTACCAAATGACCACAATTAG 1842 48.53 MKPKTLNQFDSPFLLLLLTVSSLSAAAAADCPLDFTVLRQFSRSDFSHKCQYIRLGLRLVLSHHLKLTGSFLPPPNSSGSCWNSYQSVVNEAWPGFDIRTSCGFRTRWISQGCMNITTKSEFQRIVPKSILDGVFENCNHSLENNSPCALCRGRLSIVQASALSGSSTGNLTDCQAYPSIFAAAFVTRFEPTDSRAAKCLFSLNPLSDSNRLSTVVLVVLICCSVGLATAAAGFGGWCLWRKEGKLKEKGRIGRVELGFGSGLESISESTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLCDDSEVAVKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTSLEGHQRMIVCDLMKNGSVYDHLFEYSDKKLSWSVRQKIALGTARGLAYLHHGAQPAIIHRDIKANNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLSERSDVYSFGVVLLELLSGRKALGVKSPDSQSYLVTDWAWSLVREQKAMDVLEEGMPKLGSPEVVEKYVLIGVLCSHPQLYARPSMDQVVKMLETDLSVPSIPDRPIPLVAEIDEIERSMCRKSSSQHSGSVGFHSYTLPNDHN 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2885759 2888083 + Sed0017761.1 Sed07g0383 719247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0383 613 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
Sed07g0383 613 SMART serkin_6 287 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0383 613 Pfam Protein kinase domain 289 507 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0383 613 ProSiteProfiles Protein kinase domain profile. 287 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0383 613 Gene3D Phosphorylase Kinase; domain 1 261 366 - -
Sed07g0383 613 CDD STKc_IRAK 293 563 - -
Sed07g0383 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0383 613 PANTHER OS01G0750732 PROTEIN 47 595 IPR050885 -
Sed07g0383 613 SUPERFAMILY Protein kinase-like (PK-like) 265 563 IPR011009 -
Sed07g0383 613 Pfam SPARK 27 174 IPR043891 -
Sed07g0383 613 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 249 366 - -
Sed07g0383 613 Gene3D Transferase(Phosphotransferase) domain 1 368 576 - -
Sed07g0383 613 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 368 570 - -
Sed07g0383 613 MobiDBLite consensus disorder prediction 591 613 - -
Sed07g0383 613 MobiDBLite consensus disorder prediction 592 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0383 Sed-Chr7:2885759 Sed13g0532 Sed-Chr13:3649746 6.60E-99 dispersed
Sed07g0383 Sed-Chr7:2885759 Sed09g1173 Sed-Chr9:35931512 8.20E-275 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79422 PF07714 PK_Tyr_Ser-Thr 5.40E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0383 - - - 0.0