Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0394 | ATGCTTCCGTGGGGAGGTATTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTCGGGCGGAGTAGTGGCCGGGATGCGGAGTTGCTTAAATCTGTTACGCGGGTCGATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAACGTGTGTTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTAATACACCTATAAATTGCGAGTTTAGTGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTAAAGCATAACGAAGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTTTCTGGATGATGGGACTGGTCGTGCTTTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTGCCAGTATTGAATGAGGTATTTGAAGAGTCTGGCAGATCCCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCTACTGGCACTTCCATGACTGTCGTTGGTGAGGCGGCCAAAGATGACATCGGTACCATTAGAATACAACGACCATATAAAGGGCCATTTTATGTCTCTCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTTGTACAAGTACGCTTCCCTGGGCTTGAGCATATTTGGTTTGTATCTTGTCTCAAAGCATGCTATTCTTTATCTCATGGAGAGAAGACGTCGCTGGGAATTGCAGAAAAGGGTCCTAGCCGCAGCTGCCAAGAGATCAAGCCAAGATAATGAAGGGGAAAATGATAAGACTAACAATGGATCAGATGGTACGAAGAGAGACTGTTCAATGCCAGACCTCTGCGTAATTTGTCTTGAGAGAGACTACAACGCTGTTTTTGTCCCGTGCGGCCACATGTGCTGTTGTGTAGCATGTTGTTCACAACTAACAAACTGTCCACTGTGTCGTCGACGAATTGAGCTGGTTGTAAAGACTTTTCGCCATTGA | 1029 | 45.68 | MLPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAERVLPLVVAISGRVSSNTPINCEFSGLRGVIVEETAEQHFLKHNEAGSWIQDSALMLSMSKEVPWFLDDGTGRAFVVGARSATNFILPVLNEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSMTVVGEAAKDDIGTIRIQRPYKGPFYVSPKTIDQLISNLGKWARLYKYASLGLSIFGLYLVSKHAILYLMERRRRWELQKRVLAAAAKRSSQDNEGENDKTNNGSDGTKRDCSMPDLCVICLERDYNAVFVPCGHMCCCVACCSQLTNCPLCRRRIELVVKTFRH | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2968615 | 2980991 | - | Sed0023278.1 | Sed07g0394 | 719258 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0394 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 341 | IPR013083 | - | |
Sed07g0394 | 342 | Pfam | Zinc finger, C3HC4 type (RING finger) | 293 | 334 | - | - | |
Sed07g0394 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 295 | 330 | IPR001841 | - | |
Sed07g0394 | 342 | MobiDBLite | consensus disorder prediction | 266 | 285 | - | - | |
Sed07g0394 | 342 | Pfam | E3 Ubiquitin ligase | 85 | 235 | IPR022170 | GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro) | |
Sed07g0394 | 342 | SUPERFAMILY | RING/U-box | 294 | 336 | - | - | |
Sed07g0394 | 342 | PANTHER | - | 1 | 338 | IPR044231 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g0394 | 342 | MobiDBLite | consensus disorder prediction | 269 | 283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0394 | Sed-Chr7:2968615 | Sed09g1163 | Sed-Chr9:35807171 | 3.50E-158 | dispersed | |
Sed07g0394 | Sed-Chr7:2968615 | Sed07g0395 | Sed-Chr7:2969605 | 6.60E-173 | tandem | |
Sed07g0394 | Sed-Chr7:2968615 | Sed09g1162 | Sed-Chr9:35807171 | 1.30E-181 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0394 | K15688 | - | csv:101218196 | 636.336 |