Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0394 ATGCTTCCGTGGGGAGGTATTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTCGGGCGGAGTAGTGGCCGGGATGCGGAGTTGCTTAAATCTGTTACGCGGGTCGATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAACGTGTGTTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTAATACACCTATAAATTGCGAGTTTAGTGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTAAAGCATAACGAAGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTTTCTGGATGATGGGACTGGTCGTGCTTTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTGCCAGTATTGAATGAGGTATTTGAAGAGTCTGGCAGATCCCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCTACTGGCACTTCCATGACTGTCGTTGGTGAGGCGGCCAAAGATGACATCGGTACCATTAGAATACAACGACCATATAAAGGGCCATTTTATGTCTCTCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTTGTACAAGTACGCTTCCCTGGGCTTGAGCATATTTGGTTTGTATCTTGTCTCAAAGCATGCTATTCTTTATCTCATGGAGAGAAGACGTCGCTGGGAATTGCAGAAAAGGGTCCTAGCCGCAGCTGCCAAGAGATCAAGCCAAGATAATGAAGGGGAAAATGATAAGACTAACAATGGATCAGATGGTACGAAGAGAGACTGTTCAATGCCAGACCTCTGCGTAATTTGTCTTGAGAGAGACTACAACGCTGTTTTTGTCCCGTGCGGCCACATGTGCTGTTGTGTAGCATGTTGTTCACAACTAACAAACTGTCCACTGTGTCGTCGACGAATTGAGCTGGTTGTAAAGACTTTTCGCCATTGA 1029 45.68 MLPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAERVLPLVVAISGRVSSNTPINCEFSGLRGVIVEETAEQHFLKHNEAGSWIQDSALMLSMSKEVPWFLDDGTGRAFVVGARSATNFILPVLNEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSMTVVGEAAKDDIGTIRIQRPYKGPFYVSPKTIDQLISNLGKWARLYKYASLGLSIFGLYLVSKHAILYLMERRRRWELQKRVLAAAAKRSSQDNEGENDKTNNGSDGTKRDCSMPDLCVICLERDYNAVFVPCGHMCCCVACCSQLTNCPLCRRRIELVVKTFRH 342
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2968615 2980991 - Sed0023278.1 Sed07g0394 719258
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0394 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
Sed07g0394 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 334 - -
Sed07g0394 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Sed07g0394 342 MobiDBLite consensus disorder prediction 266 285 - -
Sed07g0394 342 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Sed07g0394 342 SUPERFAMILY RING/U-box 294 336 - -
Sed07g0394 342 PANTHER - 1 338 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g0394 342 MobiDBLite consensus disorder prediction 269 283 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0394 Sed-Chr7:2968615 Sed09g1163 Sed-Chr9:35807171 3.50E-158 dispersed
Sed07g0394 Sed-Chr7:2968615 Sed07g0395 Sed-Chr7:2969605 6.60E-173 tandem
Sed07g0394 Sed-Chr7:2968615 Sed09g1162 Sed-Chr9:35807171 1.30E-181 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0394 K15688 - csv:101218196 636.336