Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0395 ATGCTTCCGTGGGGAGGTATTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTCGGGCGGAGTAGTGGCCGGGATGCGGAGTTGCTTAAATCTGTTACGCGGGTCGATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAACGTGTGTTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTAATACACCTATAAATTGCGAGTTTAGTGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTAAAGCATAACGAAGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTTTCTGGATGATGGGACTGGTCGTGCTTTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTGCCAGTATTGAATGAGGTATTTGAAGAGTCTGGCAGATCCCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCTACTGGCACTTCCATGACTGTCGTTGGTGAGGCGGCCAAAGATGACATCGGTACCATTAGAATACAACGACCATATAAAGGGCCATTTTATGTCTCTCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTTGTACAAGTACGCTTCCCTGGGCTTGAGCATATTTGGTTTGTATCTTGTCTCAAAGCATGCTATTCTTTATCTCATGGAGAGAAGACGTCGCTGGGAATTGCAGAAAAGGGTCCTAGCCGCAGCTGCCAAGAGATCAAGCCAAGATAATGAAGGGGAAAATGATAAGACTAACAATGGATCAGATGGTACGAAGAGAGACTGTTCAATGCCAGACCTCTGCGTAATTTGTCTTGAGAGAGACTACAACGCTGTTTTTGTCCCGTAA 930 45.48 MLPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAERVLPLVVAISGRVSSNTPINCEFSGLRGVIVEETAEQHFLKHNEAGSWIQDSALMLSMSKEVPWFLDDGTGRAFVVGARSATNFILPVLNEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSMTVVGEAAKDDIGTIRIQRPYKGPFYVSPKTIDQLISNLGKWARLYKYASLGLSIFGLYLVSKHAILYLMERRRRWELQKRVLAAAAKRSSQDNEGENDKTNNGSDGTKRDCSMPDLCVICLERDYNAVFVP 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2969605 2980991 - Sed0023278.2 Sed07g0395 719259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0395 309 PANTHER - 1 309 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g0395 309 MobiDBLite consensus disorder prediction 269 283 - -
Sed07g0395 309 MobiDBLite consensus disorder prediction 266 285 - -
Sed07g0395 309 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0395 Sed-Chr7:2969605 Sed09g1162 Sed-Chr9:35807171 9.90E-160 dispersed
Sed07g0394 Sed-Chr7:2968615 Sed07g0395 Sed-Chr7:2969605 6.60E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0395 K15688 - csv:101218196 561.607