Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0446 | ATGTTTGGTTCAACTATGTCAAATTCAACTTGTTTGTCTGAAGAAGCTACTAGTGTCTCTTCTGGCACAAGAGTCCACCCTGATTTCAGCTGTTTAAACCCTCTCCTTCAAACTTTTTCTGATATTCACCATCCTCCTCAAAAGCTCAAGAAGAAGCGAAGTCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCGCTATCGCCGAAAACGCTTCTCGCCACGAATCGATTTGTGTGTGAGATATGCAACAAGGGTTTCCAAAGGGATCAAAACTTGCAACTGCATAGGAGAGGGCACAACTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCAGAGCCAACATGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTTCTGCAGAAAACATGGAGAAAAGAAATGGAAATGTGATAAATGTTCTAAAGTTTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGTTATGGCCGCGGCTTCTGCCTCCTCCGGTATCGCCACCACTAATATAAACATGTCGTCTGTCAGTGCTGCCCAGTCTCTCTTCCCTTTTGGTACTCACTCCCAATTCTCGAACTTGTCGTTACCGTTGCCATTGTCGTCGTCATCGCAAACTCATATGTCCCTAAACCCTTGGGACCATCCCCAAAACCCTAACCCTAGTAACACCCTCCAAATCATCAAGCCTGAAGAATCACATTACTCTCATTCTCATTCTCACCATTTTCACCAAATTACAACTTTGCCCCTATCCAATTCCACCTCCAACAACAACACCAATAACCTTTTTAGTCTAATTCAAGACCACCACCAACACAAGGCAGGTTCTTCCTCATCCTCCTCCTTGATAACCTCACCATTCAGAAACCTCCACGTGTCGGTGCAACAGGGCACGAATGCTGCCACGTCAGCTCACTTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACGGTTGGAGTTGGGACTGCACAATCCAATCACCAACAACCCGAGTCAGTAGGTCACATGACTCACTTCAACATGCCCAACAATGCCGAGTTCGGCGTACCGACTCATATTGACTCGATGGCTCATCAATTCGGCCCCGATTATGCCTCGTGGCAGAAGAGTGACCGACTGACCAGGGACTTCCTTGGTCTTAACGGCAATGGAGGCGGCGGCGGTAATGGAGGAGTGCAAATTAGCATGAGTATGCTAACGTATGCAGGAGGATTGGAGATGTTTAAGCCTCATAATAATCATAATGCTTTTGGTTATGCAGAGTCAGCTGCCAATGAAACTTGGGATTGTTGA | 1485 | 45.52 | MFGSTMSNSTCLSEEATSVSSGTRVHPDFSCLNPLLQTFSDIHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLVMAAASASSGIATTNINMSSVSAAQSLFPFGTHSQFSNLSLPLPLSSSSQTHMSLNPWDHPQNPNPSNTLQIIKPEESHYSHSHSHHFHQITTLPLSNSTSNNNTNNLFSLIQDHHQHKAGSSSSSSLITSPFRNLHVSVQQGTNAATSAHLSATALLQKAATVGVGTAQSNHQQPESVGHMTHFNMPNNAEFGVPTHIDSMAHQFGPDYASWQKSDRLTRDFLGLNGNGGGGGNGGVQISMSMLTYAGGLEMFKPHNNHNAFGYAESAANETWDC | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3325701 | 3329419 | + | Sed0000186.1 | Sed07g0446 | 719310 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0446 | 494 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 181 | 217 | - | - | |
Sed07g0446 | 494 | SUPERFAMILY | beta-beta-alpha zinc fingers | 78 | 175 | IPR036236 | - | |
Sed07g0446 | 494 | MobiDBLite | consensus disorder prediction | 42 | 63 | - | - | |
Sed07g0446 | 494 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 44 | 447 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed07g0446 | 494 | SMART | c2h2final6 | 155 | 175 | IPR013087 | - | |
Sed07g0446 | 494 | SMART | c2h2final6 | 79 | 101 | IPR013087 | - | |
Sed07g0446 | 494 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 116 | 150 | - | - | |
Sed07g0446 | 494 | Pfam | Zinc finger, C2H2 type | 79 | 101 | IPR013087 | - | |
Sed07g0446 | 494 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Sed07g0446 | 494 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 133 | 212 | - | - | |
Sed07g0446 | 494 | MobiDBLite | consensus disorder prediction | 268 | 288 | - | - | |
Sed07g0446 | 494 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 154 | 178 | - | - | |
Sed07g0446 | 494 | Gene3D | Classic Zinc Finger | 148 | 213 | - | - | |
Sed07g0446 | 494 | FunFam | protein indeterminate-domain 12-like | 58 | 126 | - | - | |
Sed07g0446 | 494 | Gene3D | Classic Zinc Finger | 58 | 127 | - | - | |
Sed07g0446 | 494 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 101 | IPR013087 | - | |
Sed07g0446 | 494 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0446 | Sed-Chr7:3325701 | Sed07g1321 | Sed-Chr7:10092360 | 3.60E-87 | dispersed | |
Sed06g0293 | Sed-Chr6:2540922 | Sed07g0446 | Sed-Chr7:3325701 | 2.30E-83 | transposed | |
Sed07g0446 | Sed-Chr7:3325701 | Sed09g1096 | Sed-Chr9:34860892 | 4.70E-196 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39001 | PF00096 | zf-C2H2 | 0.005 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0446 | K25870 | - | csv:101208253 | 704.901 |