Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0446 ATGTTTGGTTCAACTATGTCAAATTCAACTTGTTTGTCTGAAGAAGCTACTAGTGTCTCTTCTGGCACAAGAGTCCACCCTGATTTCAGCTGTTTAAACCCTCTCCTTCAAACTTTTTCTGATATTCACCATCCTCCTCAAAAGCTCAAGAAGAAGCGAAGTCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCGCTATCGCCGAAAACGCTTCTCGCCACGAATCGATTTGTGTGTGAGATATGCAACAAGGGTTTCCAAAGGGATCAAAACTTGCAACTGCATAGGAGAGGGCACAACTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCAGAGCCAACATGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTTCTGCAGAAAACATGGAGAAAAGAAATGGAAATGTGATAAATGTTCTAAAGTTTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGTTATGGCCGCGGCTTCTGCCTCCTCCGGTATCGCCACCACTAATATAAACATGTCGTCTGTCAGTGCTGCCCAGTCTCTCTTCCCTTTTGGTACTCACTCCCAATTCTCGAACTTGTCGTTACCGTTGCCATTGTCGTCGTCATCGCAAACTCATATGTCCCTAAACCCTTGGGACCATCCCCAAAACCCTAACCCTAGTAACACCCTCCAAATCATCAAGCCTGAAGAATCACATTACTCTCATTCTCATTCTCACCATTTTCACCAAATTACAACTTTGCCCCTATCCAATTCCACCTCCAACAACAACACCAATAACCTTTTTAGTCTAATTCAAGACCACCACCAACACAAGGCAGGTTCTTCCTCATCCTCCTCCTTGATAACCTCACCATTCAGAAACCTCCACGTGTCGGTGCAACAGGGCACGAATGCTGCCACGTCAGCTCACTTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACGGTTGGAGTTGGGACTGCACAATCCAATCACCAACAACCCGAGTCAGTAGGTCACATGACTCACTTCAACATGCCCAACAATGCCGAGTTCGGCGTACCGACTCATATTGACTCGATGGCTCATCAATTCGGCCCCGATTATGCCTCGTGGCAGAAGAGTGACCGACTGACCAGGGACTTCCTTGGTCTTAACGGCAATGGAGGCGGCGGCGGTAATGGAGGAGTGCAAATTAGCATGAGTATGCTAACGTATGCAGGAGGATTGGAGATGTTTAAGCCTCATAATAATCATAATGCTTTTGGTTATGCAGAGTCAGCTGCCAATGAAACTTGGGATTGTTGA 1485 45.52 MFGSTMSNSTCLSEEATSVSSGTRVHPDFSCLNPLLQTFSDIHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLVMAAASASSGIATTNINMSSVSAAQSLFPFGTHSQFSNLSLPLPLSSSSQTHMSLNPWDHPQNPNPSNTLQIIKPEESHYSHSHSHHFHQITTLPLSNSTSNNNTNNLFSLIQDHHQHKAGSSSSSSLITSPFRNLHVSVQQGTNAATSAHLSATALLQKAATVGVGTAQSNHQQPESVGHMTHFNMPNNAEFGVPTHIDSMAHQFGPDYASWQKSDRLTRDFLGLNGNGGGGGNGGVQISMSMLTYAGGLEMFKPHNNHNAFGYAESAANETWDC 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3325701 3329419 + Sed0000186.1 Sed07g0446 719310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0446 494 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 217 - -
Sed07g0446 494 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Sed07g0446 494 MobiDBLite consensus disorder prediction 42 63 - -
Sed07g0446 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 447 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed07g0446 494 SMART c2h2final6 155 175 IPR013087 -
Sed07g0446 494 SMART c2h2final6 79 101 IPR013087 -
Sed07g0446 494 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Sed07g0446 494 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Sed07g0446 494 MobiDBLite consensus disorder prediction 1 24 - -
Sed07g0446 494 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Sed07g0446 494 MobiDBLite consensus disorder prediction 268 288 - -
Sed07g0446 494 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Sed07g0446 494 Gene3D Classic Zinc Finger 148 213 - -
Sed07g0446 494 FunFam protein indeterminate-domain 12-like 58 126 - -
Sed07g0446 494 Gene3D Classic Zinc Finger 58 127 - -
Sed07g0446 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Sed07g0446 494 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0446 Sed-Chr7:3325701 Sed07g1321 Sed-Chr7:10092360 3.60E-87 dispersed
Sed06g0293 Sed-Chr6:2540922 Sed07g0446 Sed-Chr7:3325701 2.30E-83 transposed
Sed07g0446 Sed-Chr7:3325701 Sed09g1096 Sed-Chr9:34860892 4.70E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39001 PF00096 zf-C2H2 0.005 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0446 K25870 - csv:101208253 704.901