Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0449 ATGAGCAAATTCGAATACAATTACCACGAATCTCTACTTCTCGACGTCGGAAAATCGGCTCGAAGGAGGTGGAGAATTGCCTTTACAGTGATATCCTCAATCAGGGTCATGCTTTCTCTAGCAGTGTCCAAAAAACATGGCCTAACCAACTTTGAGATCATAGAGCTGGAAGATTCCAATGAAGAACAGCAACTGCTCTACACCAAAGATGATCAACAGAAGCTGATTGAAATGGTGAAGAACAAAGACAAGGAAGCTTTTCATGAGCTTGGGAAAGCTCCAGCCATTGCTGCTTCTCTTGGAACTAATCCGGAGAATGGAATCAAGGACAATGGGGATGTCGTGAACGAACGACGCCGAGTATTCGGTTCAAACACGTACCGCAAGCGGCCTCGGAAGAGTTTCTTTCATTTTGTGGTGGAAGCTTTCAAGGACACCACCATCATCATTTTACTTGGATGTGCAGCTCTTGCTCTTGGGTTTGGAATAAAAGAACATGGACCTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCACTGGTTGTTGTTGTTTCAGCCGTCAGCAACTTCAGACAGGAGGTTCAATTCGACAAGTTGTCCAAAATAAGTAACAACATCAAAGTAGAGGTAATGAGAGATGGAAGGCGTATACAAGTTTCGATCTTCGATATCGTGGTTGGAGATGTCGTGATTCTAAAGCTTGGCGATCAAATTCCAGCGGATGGGTTGTTCTTAAGTGGGCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTTGAACTCAATTCAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTTGATGGATATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACTGCGTGGGGCGAGATGATGAGCTCGATATCCCGAGCTACTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGCCTCTCAGTTGCCTTCCTAGTTCTTGTAGTCATGTTAGCACGCTATTTCACGAGAAACACGACGGATGATTTCGGGAACACGGAGTACATCGGTCGAAGAACGGATGTAGATGATGTGATCAACGCAGTTACCCGCATAGTTGCCGTTGCAGTAACCATAGTAGTGGTTGCAATTCCTGAAGGCTTACCATTGGCTGTTACACTAACACTTGCCTACTCTATGAAGAGAATGATGGCAGATCAAGCCATGGTGAGGGAACTTTCTGCTTGTGAAACAATGGGATCAGCAACTGTGATTTGCACTGACAAAACAGGTACTTTAACATTAAACAAAATGACAGTTACCAAATTTTGGCTTGGCCAAGAGTTCATTGAGGAAAAACATCCTTCCAATACCATAGCAGAGACTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCACCAGAATCCAAAACTGAAATCTCTGGTAGTCCAACCGAGAAAGCGATTCTCTCTTGGGCGGTCACGGGATTCGGTATGGACATGGTAAAGTTGAAGAAATCATATACCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAAAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGCTCAAGTTACTTTGAAAAAAATGGAAAAACATATCCCTTAGATACCGAAACCCGAAGAAAACTCGAAAACGTAATCCAAGGAATGGCAGCTAGTAGTCTAAGATGCATTGCCTTTGCTTATAGACAATTATCAGAAGCAGAGGAAATAAACAGCATACCAACTGCCTCAAACTTGATAGAACATAGCTACACATTAATGGGAATAGTGGGCATGAAAGATCCATGCAGAGATGGAGTGAAGAAAGCAGTGAAAACATGCAAATCAGCTGGAGTTTCAATTAAAATGATCACAGGAGACAACATTTTCACAGCAAAAGCAATAGCCACAGAATGTGGAATACTAGATTTCGACCACAACACCGCAAGCAGCGGAGAAGTAATCGAAGGTTCCGAATTCCGAAACTACTCAAACGAGGAGAGACTGCAGAGGGTAGATCAAATCAAGGTGATGGCAAGATCGACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACGGGAGACGGTACGAATGACGCACCGGCTCTAAAGGAAGCCGACATAGGTCTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAAAGCTCAGACATTGTTATTTTGGATGATAACTTTACAACAGTAGCCACAGTATTGAGATGGGGAAGATGTGTATATAACAACATCCAAAAATTCATCCAATTTCAATTGACAGTCAATGTAGCAGCTCTCACAATTAACTTCATAGCAGCAGTTTCAGCTGGTGAAGTTCCATTAACAGCAGTACAATTATTATGGGTGAACCTTATAATGGATACATTGGGTGCTCTTGCACTTGCAACTGAAAGACCAAATGATGAACTAATGCACAAGCTTCCAGTGGGAAGAACAGAACCTCTAATTACAAACATCATGTGGAGAAACCTCTTAGCTCAATCTTTATATCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAATGTAAGCGAAGCCGTAAACGATACACTAATCTTCAACACATTCGTTCTCTGCCAAATCTTCAACGAGTTCAACTCGAGGAAGCTCGAGAAACGAAATGTGTTCGAAGGGATTCTAAAGAATCATTTGTTTCTTGGGATTATTGGAGTAACAGTTGTTCTACAAGTTATTATGGTAGAGTTCCTTAAGAAGTTTGCAAACACAGTGAATCTAAATGGTTGGCAATGGGGTCTTTGTATTGCCATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAATTCTTGCCTGTTTCTGATAAGCCTTTCCTTAGCTACTTCAGGTGTTTTAACTTTAAGGGCTGA 3051 42.22 MSKFEYNYHESLLLDVGKSARRRWRIAFTVISSIRVMLSLAVSKKHGLTNFEIIELEDSNEEQQLLYTKDDQQKLIEMVKNKDKEAFHELGKAPAIAASLGTNPENGIKDNGDVVNERRRVFGSNTYRKRPRKSFFHFVVEAFKDTTIIILLGCAALALGFGIKEHGPQEGWYEGGSIFVAVALVVVVSAVSNFRQEVQFDKLSKISNNIKVEVMRDGRRIQVSIFDIVVGDVVILKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRATEEQTPLQVRLNKLTTSIGKVGLSVAFLVLVVMLARYFTRNTTDDFGNTEYIGRRTDVDDVINAVTRIVAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMTVTKFWLGQEFIEEKHPSNTIAETVHELINQGVGLNTTGSVYQPSPESKTEISGSPTEKAILSWAVTGFGMDMVKLKKSYTILHVETFNSEKKRSGVLVKKLADNTIHQHWKGAAEMILSMCSSYFEKNGKTYPLDTETRRKLENVIQGMAASSLRCIAFAYRQLSEAEEINSIPTASNLIEHSYTLMGIVGMKDPCRDGVKKAVKTCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASSGEVIEGSEFRNYSNEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKLPVGRTEPLITNIMWRNLLAQSLYQIAILLIFQFQGSNIFNVSEAVNDTLIFNTFVLCQIFNEFNSRKLEKRNVFEGILKNHLFLGIIGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKFLPVSDKPFLSYFRCFNFKG 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3404556 3408962 + Sed0024164.1 Sed07g0449 719313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0449 1016 FunFam Calcium-transporting ATPase 444 642 - -
Sed07g0449 1016 FunFam Calcium-transporting ATPase 188 310 - -
Sed07g0449 1016 Pfam Cation transporter/ATPase, N-terminus 93 157 IPR004014 -
Sed07g0449 1016 Gene3D - 431 788 IPR023214 -
Sed07g0449 1016 PANTHER CATION TRANSPORTING ATPASE 64 1001 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed07g0449 1016 NCBIfam calcium-translocating P-type ATPase, PMCA-type 59 1000 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed07g0449 1016 Gene3D - 141 997 - -
Sed07g0449 1016 SUPERFAMILY HAD-like 432 848 IPR036412 -
Sed07g0449 1016 SFLD p-type atpase 416 796 IPR044492 -
Sed07g0449 1016 CDD P-type_ATPase_Ca_PMCA-like 115 876 - -
Sed07g0449 1016 NCBIfam HAD-IC family P-type ATPase 378 475 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed07g0449 1016 NCBIfam HAD-IC family P-type ATPase 714 823 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed07g0449 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 436 442 IPR018303 -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 257 271 - -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 767 779 - -
Sed07g0449 1016 PRINTS P-type cation-transporting ATPase superfamily signature 743 762 - -
Sed07g0449 1016 PRINTS H+-transporting ATPase (proton pump) signature 589 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed07g0449 1016 PRINTS H+-transporting ATPase (proton pump) signature 775 800 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed07g0449 1016 PRINTS H+-transporting ATPase (proton pump) signature 743 759 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed07g0449 1016 Pfam haloacid dehalogenase-like hydrolase 628 757 - -
Sed07g0449 1016 Pfam Cation transport ATPase (P-type) 488 571 - -
Sed07g0449 1016 SUPERFAMILY Calcium ATPase, transduction domain A 209 308 IPR008250 -
Sed07g0449 1016 FunFam Calcium-transporting ATPase 760 1002 - -
Sed07g0449 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 639 IPR023299 GO:0000166(InterPro)
Sed07g0449 1016 Gene3D - 444 642 IPR023299 GO:0000166(InterPro)
Sed07g0449 1016 Pfam Cation transporting ATPase, C-terminus 828 998 IPR006068 -
Sed07g0449 1016 SMART Cation_ATPase_N_a_2 86 163 IPR004014 -
Sed07g0449 1016 Pfam E1-E2 ATPase 210 412 - -
Sed07g0449 1016 SFLD C1.7: P-type atpase like 416 796 - -
Sed07g0449 1016 Gene3D - 115 310 - -
Sed07g0449 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 1000 IPR023298 -
Sed07g0449 1016 FunFam Calcium-transporting ATPase 636 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0449 Sed-Chr7:3404556 Sed08g1624 Sed-Chr8:31373094 0.00E+00 dispersed
Sed07g0449 Sed-Chr7:3404556 Sed07g0450 Sed-Chr7:3404556 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0449 K01537 - csv:101220140 1720.29