Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g0450 | ATGTTAAACTACCAGGTAATGAGAGATGGAAGGCGTATACAAGTTTCGATCTTCGATATCGTGGTTGGAGATGTCGTGATTCTAAAGCTTGGCGATCAAATTCCAGCGGATGGGTTGTTCTTAAGTGGGCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTTGAACTCAATTCAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTTGATGGATATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACTGCGTGGGGCGAGATGATGAGCTCGATATCCCGAGCTACTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGCCTCTCAGTTGCCTTCCTAGTTCTTGTAGTCATGTTAGCACGCTATTTCACGAGAAACACGACGGATGATTTCGGGAACACGGAGTACATCGGTCGAAGAACGGATGTAGATGATGTGATCAACGCAGTTACCCGCATAGTTGCCGTTGCAGTAACCATAGTAGTGGTTGCAATTCCTGAAGGCTTACCATTGGCTGTTACACTAACACTTGCCTACTCTATGAAGAGAATGATGGCAGATCAAGCCATGGTGAGGGAACTTTCTGCTTGTGAAACAATGGGATCAGCAACTGTGATTTGCACTGACAAAACAGGTACTTTAACATTAAACAAAATGACAGTTACCAAATTTTGGCTTGGCCAAGAGTTCATTGAGGAAAAACATCCTTCCAATACCATAGCAGAGACTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCACCAGAATCCAAAACTGAAATCTCTGGTAGTCCAACCGAGAAAGCGATTCTCTCTTGGGCGGTCACGGGATTCGGTATGGACATGGTAAAGTTGAAGAAATCATATACCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAAAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGCTCAAGTTACTTTGAAAAAAATGGAAAAACATATCCCTTAGATACCGAAACCCGAAGAAAACTCGAAAACGTAATCCAAGGAATGGCAGCTAGTAGTCTAAGATGCATTGCCTTTGCTTATAGACAATTATCAGAAGCAGAGGAAATAAACAGCATACCAACTGCCTCAAACTTGATAGAACATAGCTACACATTAATGGGAATAGTGGGCATGAAAGATCCATGCAGAGATGGAGTGAAGAAAGCAGTGAAAACATGCAAATCAGCTGGAGTTTCAATTAAAATGATCACAGGAGACAACATTTTCACAGCAAAAGCAATAGCCACAGAATGTGGAATACTAGATTTCGACCACAACACCGCAAGCAGCGGAGAAGTAATCGAAGGTTCCGAATTCCGAAACTACTCAAACGAGGAGAGACTGCAGAGGGTAGATCAAATCAAGGTGATGGCAAGATCGACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACGGGAGACGGTACGAATGACGCACCGGCTCTAAAGGAAGCCGACATAGGTCTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAAAGCTCAGACATTGTTATTTTGGATGATAACTTTACAACAGTAGCCACAGTATTGAGATGGGGAAGATGTGTATATAACAACATCCAAAAATTCATCCAATTTCAATTGACAGTCAATGTAGCAGCTCTCACAATTAACTTCATAGCAGCAGTTTCAGCTGGTGAAGTTCCATTAACAGCAGTACAATTATTATGGGTGAACCTTATAATGGATACATTGGGTGCTCTTGCACTTGCAACTGAAAGACCAAATGATGAACTAATGCACAAGCTTCCAGTGGGAAGAACAGAACCTCTAATTACAAACATCATGTGGAGAAACCTCTTAGCTCAATCTTTATATCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAATGTAAGCGAAGCCGTAAACGATACACTAATCTTCAACACATTCGTTCTCTGCCAAATCTTCAACGAGTTCAACTCGAGGAAGCTCGAGAAACGAAATGTGTTCGAAGGGATTCTAAAGAATCATTTGTTTCTTGGGATTATTGGAGTAACAGTTGTTCTACAAGTTATTATGGTAGAGTTCCTTAAGAAGTTTGCAAACACAGTGAATCTAAATGGTTGGCAATGGGGTCTTTGTATTGCCATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAATTCTTGCCTGTTTCTGATAAGCCTTTCCTTAGCTACTTCAGGTGTTTTAACTTTAAGGGCTGA | 2427 | 41.66 | MLNYQVMRDGRRIQVSIFDIVVGDVVILKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRATEEQTPLQVRLNKLTTSIGKVGLSVAFLVLVVMLARYFTRNTTDDFGNTEYIGRRTDVDDVINAVTRIVAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMTVTKFWLGQEFIEEKHPSNTIAETVHELINQGVGLNTTGSVYQPSPESKTEISGSPTEKAILSWAVTGFGMDMVKLKKSYTILHVETFNSEKKRSGVLVKKLADNTIHQHWKGAAEMILSMCSSYFEKNGKTYPLDTETRRKLENVIQGMAASSLRCIAFAYRQLSEAEEINSIPTASNLIEHSYTLMGIVGMKDPCRDGVKKAVKTCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASSGEVIEGSEFRNYSNEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKLPVGRTEPLITNIMWRNLLAQSLYQIAILLIFQFQGSNIFNVSEAVNDTLIFNTFVLCQIFNEFNSRKLEKRNVFEGILKNHLFLGIIGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKFLPVSDKPFLSYFRCFNFKG | 808 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3404556 | 3408962 | + | Sed0024164.2 | Sed07g0450 | 719314 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g0450 | 808 | Gene3D | - | 3 | 83 | - | - | |
| Sed07g0450 | 808 | FunFam | Calcium-transporting ATPase | 1 | 102 | - | - | |
| Sed07g0450 | 808 | Pfam | Cation transporting ATPase, C-terminus | 620 | 790 | IPR006068 | - | |
| Sed07g0450 | 808 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 228 | 234 | IPR018303 | - | |
| Sed07g0450 | 808 | Gene3D | - | 279 | 434 | IPR023299 | GO:0000166(InterPro) | |
| Sed07g0450 | 808 | Gene3D | - | 84 | 249 | - | - | |
| Sed07g0450 | 808 | FunFam | Calcium-transporting ATPase | 428 | 580 | - | - | |
| Sed07g0450 | 808 | SFLD | Haloacid Dehalogenase | 208 | 588 | - | - | |
| Sed07g0450 | 808 | SUPERFAMILY | Calcium ATPase, transduction domain A | 4 | 100 | IPR008250 | - | |
| Sed07g0450 | 808 | Gene3D | - | 435 | 551 | IPR023214 | - | |
| Sed07g0450 | 808 | FunFam | Calcium-transporting ATPase | 236 | 434 | - | - | |
| Sed07g0450 | 808 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 96 | 792 | IPR023298 | - | |
| Sed07g0450 | 808 | PRINTS | H+-transporting ATPase (proton pump) signature | 381 | 399 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed07g0450 | 808 | PRINTS | H+-transporting ATPase (proton pump) signature | 567 | 592 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed07g0450 | 808 | PRINTS | H+-transporting ATPase (proton pump) signature | 535 | 551 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed07g0450 | 808 | Pfam | haloacid dehalogenase-like hydrolase | 420 | 549 | - | - | |
| Sed07g0450 | 808 | SFLD | p-type atpase | 208 | 588 | IPR044492 | - | |
| Sed07g0450 | 808 | SUPERFAMILY | HAD-like | 224 | 640 | IPR036412 | - | |
| Sed07g0450 | 808 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 5 | 792 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed07g0450 | 808 | Gene3D | - | 552 | 794 | - | - | |
| Sed07g0450 | 808 | FunFam | Calcium-transporting ATPase | 552 | 794 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 535 | 554 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 49 | 63 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 427 | 438 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 226 | 240 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 449 | 459 | - | - | |
| Sed07g0450 | 808 | PRINTS | P-type cation-transporting ATPase superfamily signature | 559 | 571 | - | - | |
| Sed07g0450 | 808 | Pfam | Cation transport ATPase (P-type) | 280 | 363 | - | - | |
| Sed07g0450 | 808 | PANTHER | CATION TRANSPORTING ATPASE | 4 | 793 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed07g0450 | 808 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 233 | 431 | IPR023299 | GO:0000166(InterPro) | |
| Sed07g0450 | 808 | Pfam | E1-E2 ATPase | 5 | 204 | - | - | |
| Sed07g0450 | 808 | NCBIfam | HAD-IC family P-type ATPase | 506 | 615 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed07g0450 | 808 | NCBIfam | HAD-IC family P-type ATPase | 170 | 267 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0450 | Sed-Chr7:3404556 | Sed08g1624 | Sed-Chr8:31373094 | 4.70E-294 | dispersed | |
| Sed07g0449 | Sed-Chr7:3404556 | Sed07g0450 | Sed-Chr7:3404556 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g0450 | K01537 | - | csv:101220140 | 1436.01 |