Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0482 ATGTCACTTGATAATTACCATATGTTTGGCTACCAAGAAAATTTCTTGTGGAACAACAATAATGATCAAAACTGTCCTGGAAAAGAGAATTCCCACCTCTCATTTGACTTTAGCTACTTGGAGGAGATGTTGCTTGCTGATATGCTTGACGTGGAGATCGGAGGGACGTCTTCGTCATCGGATTCGAGCTCTTCCTCGTCTTCAATGGTGGAAGTTAAGGAGGAAAGATTAGAAGATCAAGAAGGTAAGTTGAGTGATGTCGTTGAGCATGAAGATCAACCACGGGAGGAGAGGGCGTATAGAGGGGTGCGGAGGAGGCCATGGGGAAAGTACGCGGCCGAGATTAGGGACTCGACACGACAAGGGGTGAGGGTTTGGCTGGGGACGTTTGAGAGTGCGGAGGAGGCTGCATTGGCCTATGACCAAGCTGCATTTTGTATGAGAGGGGCATTGGCCACGCTGAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTTCGGGAGATGAAGTACCGATGGGAGGTCGGGTGCTCGCCCGTCCTAGCGCTTAAACGACGCCACTCGATACGAAGGAAGAAGATGGCGGAGGTGGAAAAAATGGAGAAGAAGATGAAGAAGAAGAAGAAAAATGTAGTTGTTTTTGAAGATTTGGGTGTTGAGTACTTAGAAGAACTCTTGAGTTTGACTTCTTAA 690 47.83 MSLDNYHMFGYQENFLWNNNNDQNCPGKENSHLSFDFSYLEEMLLADMLDVEIGGTSSSSDSSSSSSSMVEVKEERLEDQEGKLSDVVEHEDQPREERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEEAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWEVGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKNVVVFEDLGVEYLEELLSLTS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3678213 3678902 + Sed0000178.1 Sed07g0482 719346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0482 229 FunFam Ethylene-responsive transcription factor 2 98 159 - -
Sed07g0482 229 Coils Coil 189 216 - -
Sed07g0482 229 Gene3D AP2/ERF domain 99 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 PANTHER DNA-BINDING DOMAIN 63 199 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed07g0482 229 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 MobiDBLite consensus disorder prediction 71 98 - -
Sed07g0482 229 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677(InterPro)
Sed07g0482 229 MobiDBLite consensus disorder prediction 55 70 - -
Sed07g0482 229 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 SMART rav1_2 99 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 Pfam AP2 domain 100 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 CDD AP2 100 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0482 229 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0107 Sed-Chr5:648617 Sed07g0482 Sed-Chr7:3678213 1.20E-42 dispersed
Sed07g0482 Sed-Chr7:3678213 Sed09g1060 Sed-Chr9:34167373 1.40E-78 dispersed
Sed07g0481 Sed-Chr7:3658297 Sed07g0482 Sed-Chr7:3678213 3.70E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39009 PF00847 AP2 8.70E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0482 K14516 - csv:101205053 257.684