Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0495 | ATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCCACCGAAAAGGAGAGAATCAATGCTGAACGCAACAATGCAAAGGAGGAGCTATATCACATCAACCAAATTATGGATCTAATTATCCGTATACGAGATTGGATGGTTAGAAAGGACTACTTTCGTGGGATAAATGGAGTCTCGGTTCCATCGTACTTTCGCTGCCCATTGTCTTTGGAGCTGATGGTTGATCCAGTAACTGTGGCATCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATTGATAGTGGTCTGAACATTTGCCCCAACACTCATCAGACGCTCACACATACAAATCTCATTCCCAATTACAATTTTAAAGCCATGATATTGAATTGGTGCGATGAAAACAAGTTGAACATGGTTCAATTGTCACAGCAGGATTCAAATCGAAGTGATAGCTTTCATTATTCTTTGCATGGTAGCAATTCAACTGCAAGATCATCTCCTGAAGTTGAAAAGGGAGCCAAGCAAAATGAGGACGTTTTAACTAGTTTAATCGGAGGCAAAGCTAATGATCGGAGAAATGAAACCAAAAGGTTTGACCACCCTTCCCCTCAGCAGTCGTATATCGACAGCAGAAGTGAATCAGCCTCCAGTGCCTTCTCTAGCATCGATTATGTTCCATCGGCACTGAATGAGTTGAAGATATCAACTAAACACAAAAATATAAAGGAATTATCTGGAGAAATCACATCAGAACATCATACTGCATCTCATAATGAACCATCAGTGTTAAATTCATCATCAGAAGGTGGACAATTACAGGCTTGTAAAACAGAATCAAGCAAGGTGGAGAATGAAAACTGCAATGGTACAACGAATAACTCAATTCCTGTAGAGCTGGAGTCTGATAACTCGTCTGGAGATTTGCACATCAAGAAATTAATTGCAGACCTTAAGAGTCAAAGGGATGAAGTTCAAATGAAAGCTGCAGAAGATTTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTACAATTGGTCAATGTGGGGCCATAGGACCCTTACTTTCACTGTTATTTTCTGACAGAAAGCCGATGCAAGAGCATGCCGTGACAGCGCTCTTAAACCTATCAATTGATGAAAATAATAAAGCTATGATAGCACAAGCAGGAGCTATAGAACCACTAATTCATGTTTTGAAGACAGGAACCTCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTATCTCTGTATTAGAAGAATACAAGGCCAAAATCGGACGGTCGGGTGCAGTTAAAGCGTTGGTGGATCTCTTAGGTGAGGGTACTTTGAGGGGCAAGAAAGATGCGGCTACCGCTTTGTTCAACTTATCTATTTTTCATGAAAATAAGGTTCGTATAGTTCAAGCAGGAGCAGTTAAATACCTTGTTGGGCTTCTAGACACTGCCACAGGTATGGTTGACAAGGCTGCTGCACTTCTTGCTAATTTATCAACAATTTCGGAGGGACGATTGGCAATTGCGCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATCTGGTTCTATGAGAGGAAAGGAAAATGCTGCATCTACTCTGTTGCAACTGTGCCTTCATAGTTCCAAGTTTTGTACTCTGGTTCTCCAAGAAGGAGCTGTTCCACCTCTTGTTGCCTTGTCTCAGTCTGGCACACCTAGAGCTAAAGAAAAGGCACAACAGCTGCTCAGCCATTTTCGGAACCAACGAGATGGATCGGCAGGGAAAGGAAAATCATAG | 1776 | 41.78 | MSNQELLKETIATEKERINAERNNAKEELYHINQIMDLIIRIRDWMVRKDYFRGINGVSVPSYFRCPLSLELMVDPVTVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYNFKAMILNWCDENKLNMVQLSQQDSNRSDSFHYSLHGSNSTARSSPEVEKGAKQNEDVLTSLIGGKANDRRNETKRFDHPSPQQSYIDSRSESASSAFSSIDYVPSALNELKISTKHKNIKELSGEITSEHHTASHNEPSVLNSSSEGGQLQACKTESSKVENENCNGTTNNSIPVELESDNSSGDLHIKKLIADLKSQRDEVQMKAAEDLRLLAKDNVENRVTIGQCGAIGPLLSLLFSDRKPMQEHAVTALLNLSIDENNKAMIAQAGAIEPLIHVLKTGTSTAKENSAATLFSISVLEEYKAKIGRSGAVKALVDLLGEGTLRGKKDAATALFNLSIFHENKVRIVQAGAVKYLVGLLDTATGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVESGSMRGKENAASTLLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSAGKGKS | 591 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3770436 | 3773745 | + | Sed0001174.3 | Sed07g0495 | 719359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0495 | 591 | SMART | Ubox_2 | 63 | 126 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g0495 | 591 | CDD | RING-Ubox_PUB | 61 | 113 | IPR045210 | - | |
Sed07g0495 | 591 | Gene3D | - | 443 | 588 | IPR011989 | - | |
Sed07g0495 | 591 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 134 | IPR013083 | - | |
Sed07g0495 | 591 | MobiDBLite | consensus disorder prediction | 245 | 298 | - | - | |
Sed07g0495 | 591 | ProSiteProfiles | U-box domain profile. | 59 | 133 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g0495 | 591 | Pfam | U-box domain | 60 | 131 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g0495 | 591 | Gene3D | - | 288 | 442 | IPR011989 | - | |
Sed07g0495 | 591 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 469 | 510 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | SUPERFAMILY | RING/U-box | 58 | 134 | - | - | |
Sed07g0495 | 591 | Coils | Coil | 3 | 28 | - | - | |
Sed07g0495 | 591 | FunFam | RING-type E3 ubiquitin transferase | 60 | 131 | - | - | |
Sed07g0495 | 591 | PANTHER | U BOX DOMAIN-CONTAINING | 2 | 582 | - | - | |
Sed07g0495 | 591 | SMART | arm_5 | 458 | 497 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | SMART | arm_5 | 498 | 538 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | SMART | arm_5 | 376 | 416 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | SMART | arm_5 | 417 | 457 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | SMART | arm_5 | 335 | 375 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 346 | 388 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | MobiDBLite | consensus disorder prediction | 569 | 591 | - | - | |
Sed07g0495 | 591 | FunFam | RING-type E3 ubiquitin transferase | 291 | 584 | - | - | |
Sed07g0495 | 591 | Pfam | Armadillo/beta-catenin-like repeat | 335 | 374 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | Pfam | Armadillo/beta-catenin-like repeat | 377 | 415 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | Pfam | Armadillo/beta-catenin-like repeat | 500 | 537 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | Pfam | Armadillo/beta-catenin-like repeat | 419 | 456 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | Coils | Coil | 306 | 326 | - | - | |
Sed07g0495 | 591 | MobiDBLite | consensus disorder prediction | 145 | 165 | - | - | |
Sed07g0495 | 591 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | IPR000225 | GO:0005515(InterPro) | |
Sed07g0495 | 591 | MobiDBLite | consensus disorder prediction | 145 | 209 | - | - | |
Sed07g0495 | 591 | MobiDBLite | consensus disorder prediction | 251 | 297 | - | - | |
Sed07g0495 | 591 | SUPERFAMILY | ARM repeat | 306 | 578 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0493 | Sed-Chr7:3767309 | Sed07g0495 | Sed-Chr7:3770436 | 6.10E-235 | dispersed | |
Sed07g0495 | Sed-Chr7:3770436 | Sed13g1382 | Sed-Chr13:19282203 | 7.70E-20 | dispersed | |
Sed07g0494 | Sed-Chr7:3768899 | Sed07g0495 | Sed-Chr7:3770436 | 6.10E-235 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0495 | - | - | - | 0.0 |