Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0495 ATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCCACCGAAAAGGAGAGAATCAATGCTGAACGCAACAATGCAAAGGAGGAGCTATATCACATCAACCAAATTATGGATCTAATTATCCGTATACGAGATTGGATGGTTAGAAAGGACTACTTTCGTGGGATAAATGGAGTCTCGGTTCCATCGTACTTTCGCTGCCCATTGTCTTTGGAGCTGATGGTTGATCCAGTAACTGTGGCATCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATTGATAGTGGTCTGAACATTTGCCCCAACACTCATCAGACGCTCACACATACAAATCTCATTCCCAATTACAATTTTAAAGCCATGATATTGAATTGGTGCGATGAAAACAAGTTGAACATGGTTCAATTGTCACAGCAGGATTCAAATCGAAGTGATAGCTTTCATTATTCTTTGCATGGTAGCAATTCAACTGCAAGATCATCTCCTGAAGTTGAAAAGGGAGCCAAGCAAAATGAGGACGTTTTAACTAGTTTAATCGGAGGCAAAGCTAATGATCGGAGAAATGAAACCAAAAGGTTTGACCACCCTTCCCCTCAGCAGTCGTATATCGACAGCAGAAGTGAATCAGCCTCCAGTGCCTTCTCTAGCATCGATTATGTTCCATCGGCACTGAATGAGTTGAAGATATCAACTAAACACAAAAATATAAAGGAATTATCTGGAGAAATCACATCAGAACATCATACTGCATCTCATAATGAACCATCAGTGTTAAATTCATCATCAGAAGGTGGACAATTACAGGCTTGTAAAACAGAATCAAGCAAGGTGGAGAATGAAAACTGCAATGGTACAACGAATAACTCAATTCCTGTAGAGCTGGAGTCTGATAACTCGTCTGGAGATTTGCACATCAAGAAATTAATTGCAGACCTTAAGAGTCAAAGGGATGAAGTTCAAATGAAAGCTGCAGAAGATTTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTACAATTGGTCAATGTGGGGCCATAGGACCCTTACTTTCACTGTTATTTTCTGACAGAAAGCCGATGCAAGAGCATGCCGTGACAGCGCTCTTAAACCTATCAATTGATGAAAATAATAAAGCTATGATAGCACAAGCAGGAGCTATAGAACCACTAATTCATGTTTTGAAGACAGGAACCTCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTATCTCTGTATTAGAAGAATACAAGGCCAAAATCGGACGGTCGGGTGCAGTTAAAGCGTTGGTGGATCTCTTAGGTGAGGGTACTTTGAGGGGCAAGAAAGATGCGGCTACCGCTTTGTTCAACTTATCTATTTTTCATGAAAATAAGGTTCGTATAGTTCAAGCAGGAGCAGTTAAATACCTTGTTGGGCTTCTAGACACTGCCACAGGTATGGTTGACAAGGCTGCTGCACTTCTTGCTAATTTATCAACAATTTCGGAGGGACGATTGGCAATTGCGCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATCTGGTTCTATGAGAGGAAAGGAAAATGCTGCATCTACTCTGTTGCAACTGTGCCTTCATAGTTCCAAGTTTTGTACTCTGGTTCTCCAAGAAGGAGCTGTTCCACCTCTTGTTGCCTTGTCTCAGTCTGGCACACCTAGAGCTAAAGAAAAGGCACAACAGCTGCTCAGCCATTTTCGGAACCAACGAGATGGATCGGCAGGGAAAGGAAAATCATAG 1776 41.78 MSNQELLKETIATEKERINAERNNAKEELYHINQIMDLIIRIRDWMVRKDYFRGINGVSVPSYFRCPLSLELMVDPVTVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYNFKAMILNWCDENKLNMVQLSQQDSNRSDSFHYSLHGSNSTARSSPEVEKGAKQNEDVLTSLIGGKANDRRNETKRFDHPSPQQSYIDSRSESASSAFSSIDYVPSALNELKISTKHKNIKELSGEITSEHHTASHNEPSVLNSSSEGGQLQACKTESSKVENENCNGTTNNSIPVELESDNSSGDLHIKKLIADLKSQRDEVQMKAAEDLRLLAKDNVENRVTIGQCGAIGPLLSLLFSDRKPMQEHAVTALLNLSIDENNKAMIAQAGAIEPLIHVLKTGTSTAKENSAATLFSISVLEEYKAKIGRSGAVKALVDLLGEGTLRGKKDAATALFNLSIFHENKVRIVQAGAVKYLVGLLDTATGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVESGSMRGKENAASTLLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSAGKGKS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3770436 3773745 + Sed0001174.3 Sed07g0495 719359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0495 591 SMART Ubox_2 63 126 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g0495 591 CDD RING-Ubox_PUB 61 113 IPR045210 -
Sed07g0495 591 Gene3D - 443 588 IPR011989 -
Sed07g0495 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 134 IPR013083 -
Sed07g0495 591 MobiDBLite consensus disorder prediction 245 298 - -
Sed07g0495 591 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g0495 591 Pfam U-box domain 60 131 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g0495 591 Gene3D - 288 442 IPR011989 -
Sed07g0495 591 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 510 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 SUPERFAMILY RING/U-box 58 134 - -
Sed07g0495 591 Coils Coil 3 28 - -
Sed07g0495 591 FunFam RING-type E3 ubiquitin transferase 60 131 - -
Sed07g0495 591 PANTHER U BOX DOMAIN-CONTAINING 2 582 - -
Sed07g0495 591 SMART arm_5 458 497 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 SMART arm_5 498 538 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 SMART arm_5 335 375 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 MobiDBLite consensus disorder prediction 569 591 - -
Sed07g0495 591 FunFam RING-type E3 ubiquitin transferase 291 584 - -
Sed07g0495 591 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 Pfam Armadillo/beta-catenin-like repeat 377 415 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 Pfam Armadillo/beta-catenin-like repeat 500 537 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 Pfam Armadillo/beta-catenin-like repeat 419 456 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 Coils Coil 306 326 - -
Sed07g0495 591 MobiDBLite consensus disorder prediction 145 165 - -
Sed07g0495 591 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Sed07g0495 591 MobiDBLite consensus disorder prediction 145 209 - -
Sed07g0495 591 MobiDBLite consensus disorder prediction 251 297 - -
Sed07g0495 591 SUPERFAMILY ARM repeat 306 578 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0493 Sed-Chr7:3767309 Sed07g0495 Sed-Chr7:3770436 6.10E-235 dispersed
Sed07g0495 Sed-Chr7:3770436 Sed13g1382 Sed-Chr13:19282203 7.70E-20 dispersed
Sed07g0494 Sed-Chr7:3768899 Sed07g0495 Sed-Chr7:3770436 6.10E-235 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0495 - - - 0.0