Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0516 ATGGATTCGGCGAGGAGTTGGTTTCATAAGCTTCAGCCAAGAGATAGGTTGAGGGGGAGCTCTTCGAAGAAGAAGGATAATAGTTTGGGAGGGAATGAGGATTCTACTGATCAAATGGATGATGAATCTCTTTCTAATTCCACTAAGCAGAAGGCTGCTGCAGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGGCGAAATATATTGGAAAAGAAATTGGCTGATGCTGATGTTTCAGAAGAAGATCAAAACAATCTACTTAAGTTTTTAGAGAAGAAAGAAACTGAGTACATGCGCATCCAGAGGCACAAAATGGGTGTCACGGACTTTGATTTACTAACAATGATTGGAAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGGAGGGGCCAGGTGGAGCATGTAAAAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTGTACCTTATCATGGAGTACCTACCGGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACATTAACTGAAGATGAAGCAAGATTTTATGTAGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACCTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTAAACTTCAAGAACAAGATTTTGATAGTGCTCGGGCTGGACAAAATGATGAGCGCAGTGCAGCTCCTACACGTACTCAACAAGAGCAACTAGAACATTGGCAGAAGAATCGCAGAATGCTTGCTTTTTCAACAGTTGGAACACCAGATTATATTGCTCCGGAGGTTTTGTTGAAGAAAGGTTATGGAATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTACGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTTAACTGGAAAACTCATTTAAAGTTCCCTGAGGAGGTAACCCTATCTTCCTTGGCAAAAGATCTCATCAACAAACTACTATGCAATGTTAACCAGAGGCTAGGTACAAATGGCGCAGATGAACTTAAGGTTCATCCGTGGTTTGAAGGTATCGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACTCTCAAAACTGTACTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTACAAGAACTTCGAAATTGTCAACGATTATCAGTTGCCTGGGATGGCTGAGTTGAAGAAAAAAAGCAACAAACCGAAGAGACCCTCAATCAAGTCACTCTTTGATGGTGAGTCGGAAGCATCAGATGCATCTGATACATCTAATCATAGTCAGCGCACCGAAGGTAGCTTTTCGAACTCAATGACATCATCTCAACTGGATGTAATTGAAGAGAGGAAACAGTCGATGTAG 1665 40.48 MDSARSWFHKLQPRDRLRGSSSKKKDNSLGGNEDSTDQMDDESLSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRIQRHKMGVTDFDLLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSKLQEQDFDSARAGQNDERSAAPTRTQQEQLEHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEVTLSSLAKDLINKLLCNVNQRLGTNGADELKVHPWFEGIEWDRLYQMEAAFVPEVKDELDTQNFEKFEECDSQNCTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSNKPKRPSIKSLFDGESEASDASDTSNHSQRTEGSFSNSMTSSQLDVIEERKQSM 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3913891 3921989 + Sed0020800.1 Sed07g0516 719380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0516 554 CDD MobB_NDR_LATS-like 55 116 - -
Sed07g0516 554 Coils Coil 63 83 - -
Sed07g0516 554 Pfam Protein kinase domain 123 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Sed07g0516 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 484 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed07g0516 554 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 MobiDBLite consensus disorder prediction 1 31 - -
Sed07g0516 554 ProSiteProfiles Protein kinase domain profile. 121 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 MobiDBLite consensus disorder prediction 497 554 - -
Sed07g0516 554 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Sed07g0516 554 SMART pkinase_C_6 417 481 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 MobiDBLite consensus disorder prediction 497 511 - -
Sed07g0516 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 MobiDBLite consensus disorder prediction 280 299 - -
Sed07g0516 554 MobiDBLite consensus disorder prediction 517 554 - -
Sed07g0516 554 Gene3D Transferase(Phosphotransferase) domain 1 312 436 - -
Sed07g0516 554 Gene3D Transferase(Phosphotransferase) domain 1 205 274 - -
Sed07g0516 554 SUPERFAMILY Protein kinase-like (PK-like) 95 468 IPR011009 -
Sed07g0516 554 SMART serkin_6 121 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 MobiDBLite consensus disorder prediction 1 55 - -
Sed07g0516 554 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0516 554 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Sed07g0516 554 Gene3D Phosphorylase Kinase; domain 1 92 204 - -
Sed07g0516 554 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Sed07g0516 554 CDD STKc_NDR_like 120 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0516 Sed-Chr7:3913891 Sed07g0518 Sed-Chr7:3913891 2.10E-298 dispersed
Sed07g0516 Sed-Chr7:3913891 Sed07g0517 Sed-Chr7:3913891 1.30E-279 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79425 PF00069 Pkinase 1.40E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0516 K08790 - csv:101221720 993.416