Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0517 | ATGGATTCGGCGAGGAGTTGGTTTCATAAGCTTCAGCCAAGAGATAGGTTGAGGGGGAGCTCTTCGAAGAAGAAGGATAATAGTTTGGGAGGGAATGAGGATTCTACTGATCAAATGGATGATGAATCTCTTTCTAATTCCACTAAGCAGAAGGCTGCTGCAGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGGCGAAATATATTGGAAAAGAAATTGGCTGATGCTGATGTTTCAGAAGAAGATCAAAACAATCTACTTAAGTTTTTAGAGAAGAAAGAAACTGAGTACATGCGCATCCAGAGGCACAAAATGGGTGTCACGGACTTTGATTTACTAACAATGATTGGAAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGGAGGGGCCAGGTGGAGCATGTAAAAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTGTACCTTATCATGGAGTACCTACCGGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACATTAACTGAAGATGAAGCAAGATTTTATGTAGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACCTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTAAACTTCAAGAACAAGATTTTGATAGTGCTCGGGCTGGACAAAATGATGAGCGCAGTGCAGCTCCTACACGTACTCAACAAGAGCAACTAGAACATTGGCAGAAGAATCGCAGAATGCTTGCTTTTTCAACAGTTGGAACACCAGATTATATTGCTCCGGAGGTTTTGTTGAAGAAAGGTTATGGAATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTACGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTTAACTGGAAAACTCATTTAAAGTTCCCTGAGGAGGTAACCCTATCTTCCTTGGCAAAAGATCTCATCAACAAACTACTATGCAATGTTAACCAGAGGCTAGGTACAAATGGCGCAGATGAACTTAAGGTTCATCCGTGGTTTGAAGGTATCGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACTCTCAAAACTGTACTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTACAAGAACTTCGAAATTGTCAACGATTATCAGTTGCCTGGGATGGCTGAGTTGAAGAAAAAAAGCAACAAACCGAAGAGACCCTCAATCAAGTCACTCTTTGGTATGCATCAACCCGCTCCTTTTTCACTCACTGTTCACACAACTTATTACCAACTCATTCCATTGCAATGCTACCTGACAAATTTGAATTATCGTTTCGGACAGATGGTGAGTCGGAAGCATCAGATGCATCTGATACATCTAATCATAGTCAGCGCACCGAAGGTAGCTTTTCGAACTCAATGA | 1722 | 40.48 | MDSARSWFHKLQPRDRLRGSSSKKKDNSLGGNEDSTDQMDDESLSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRIQRHKMGVTDFDLLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSKLQEQDFDSARAGQNDERSAAPTRTQQEQLEHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEVTLSSLAKDLINKLLCNVNQRLGTNGADELKVHPWFEGIEWDRLYQMEAAFVPEVKDELDTQNFEKFEECDSQNCTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSNKPKRPSIKSLFGMHQPAPFSLTVHTTYYQLIPLQCYLTNLNYRFGQMVSRKHQMHLIHLIIVSAPKVAFRTQ | 573 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3913891 | 3921989 | + | Sed0020800.2 | Sed07g0517 | 719381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0517 | 573 | CDD | MobB_NDR_LATS-like | 55 | 116 | - | - | |
Sed07g0517 | 573 | Coils | Coil | 63 | 83 | - | - | |
Sed07g0517 | 573 | SUPERFAMILY | Protein kinase-like (PK-like) | 95 | 468 | IPR011009 | - | |
Sed07g0517 | 573 | ProSitePatterns | Protein kinases ATP-binding region signature. | 127 | 150 | IPR017441 | GO:0005524(InterPro) | |
Sed07g0517 | 573 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 417 | 489 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Sed07g0517 | 573 | ProSiteProfiles | Protein kinase domain profile. | 121 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | SMART | pkinase_C_6 | 417 | 481 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 240 | 252 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 38 | 484 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Sed07g0517 | 573 | FunFam | Non-specific serine/threonine protein kinase | 205 | 272 | - | - | |
Sed07g0517 | 573 | SMART | serkin_6 | 121 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Sed07g0517 | 573 | Pfam | Protein kinase C terminal domain | 435 | 479 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | Pfam | Protein kinase domain | 123 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g0517 | 573 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 434 | - | - | |
Sed07g0517 | 573 | Gene3D | Phosphorylase Kinase; domain 1 | 119 | 445 | - | - | |
Sed07g0517 | 573 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
Sed07g0517 | 573 | FunFam | Non-specific serine/threonine protein kinase | 92 | 204 | - | - | |
Sed07g0517 | 573 | FunFam | Non-specific serine/threonine protein kinase | 315 | 434 | - | - | |
Sed07g0517 | 573 | CDD | STKc_NDR_like | 120 | 480 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0517 | Sed-Chr7:3913891 | Sed09g1040 | Sed-Chr9:33812872 | 2.20E-258 | dispersed | |
Sed07g0516 | Sed-Chr7:3913891 | Sed07g0517 | Sed-Chr7:3913891 | 1.30E-279 | tandem | |
Sed07g0517 | Sed-Chr7:3913891 | Sed07g0518 | Sed-Chr7:3913891 | 1.80E-279 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79426 | PF00069 | Pkinase | 1.60E-63 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0517 | K08790 | - | csv:101221720 | 945.651 |