Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0525 ATGGCTGCCTCTTCTTCTTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCATGAACTCGGCGCCTCTCACTTCTCCGCTATCCACAAAGTTTTTGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCAGTGAAGCGGCCATGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTCTCACATATTTTCGCCCTCCAACAACAGGCTATGAATTTAAGGGCTCAAGCGGCTTATTTGAGAGAGCAAGCAACTCAAATCCTTCTCAACAGCTATATTGCAAGAAACCCTAATGAATTTTTGTACGAAAATTCTCCATTTTATTCCGACGAGCAATTACAAGATCTTCAAAGTTGGCTTCTGGCTGAGAGCTGCGGCACCGCCGTGCCGGAGTTTGAGCCTGCGGCGGTGCCGTACGTTGAGATTGGTGTCGCAAATTCAAATCTCGCCGGAGATTTCTGCTGCTAA 543 49.17 MAASSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRSEAAMTISYEAQARLQDPIYGCVSHIFALQQQAMNLRAQAAYLREQATQILLNSYIARNPNEFLYENSPFYSDEQLQDLQSWLLAESCGTAVPEFEPAAVPYVEIGVANSNLAGDFCC 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3946096 3946907 - Sed0014869.1 Sed07g0525 719389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0525 180 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Sed07g0525 180 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Sed07g0525 180 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 121 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0101 Sed-Chr5:585913 Sed07g0525 Sed-Chr7:3946096 2.10E-40 dispersed
Sed07g0525 Sed-Chr7:3946096 Sed09g0109 Sed-Chr9:822546 1.20E-37 dispersed
Sed07g0525 Sed-Chr7:3946096 Sed01g4320 Sed-Chr1:71312615 1.20E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39012 PF03195 LOB 1.70E-34 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0525 K13945 - csv:101220863 307.375