Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0525 | ATGGCTGCCTCTTCTTCTTCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTACTTCCGCCATGAACTCGGCGCCTCTCACTTCTCCGCTATCCACAAAGTTTTTGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCCCACCGCAGTGAAGCGGCCATGACGATCTCCTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTCTCACATATTTTCGCCCTCCAACAACAGGCTATGAATTTAAGGGCTCAAGCGGCTTATTTGAGAGAGCAAGCAACTCAAATCCTTCTCAACAGCTATATTGCAAGAAACCCTAATGAATTTTTGTACGAAAATTCTCCATTTTATTCCGACGAGCAATTACAAGATCTTCAAAGTTGGCTTCTGGCTGAGAGCTGCGGCACCGCCGTGCCGGAGTTTGAGCCTGCGGCGGTGCCGTACGTTGAGATTGGTGTCGCAAATTCAAATCTCGCCGGAGATTTCTGCTGCTAA | 543 | 49.17 | MAASSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRSEAAMTISYEAQARLQDPIYGCVSHIFALQQQAMNLRAQAAYLREQATQILLNSYIARNPNEFLYENSPFYSDEQLQDLQSWLLAESCGTAVPEFEPAAVPYVEIGVANSNLAGDFCC | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3946096 | 3946907 | - | Sed0014869.1 | Sed07g0525 | 719389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0525 | 180 | ProSiteProfiles | LOB domain profile. | 7 | 109 | IPR004883 | - | |
Sed07g0525 | 180 | Pfam | Lateral organ boundaries (LOB) domain | 8 | 105 | IPR004883 | - | |
Sed07g0525 | 180 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 121 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0101 | Sed-Chr5:585913 | Sed07g0525 | Sed-Chr7:3946096 | 2.10E-40 | dispersed | |
Sed07g0525 | Sed-Chr7:3946096 | Sed09g0109 | Sed-Chr9:822546 | 1.20E-37 | dispersed | |
Sed07g0525 | Sed-Chr7:3946096 | Sed01g4320 | Sed-Chr1:71312615 | 1.20E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39012 | PF03195 | LOB | 1.70E-34 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0525 | K13945 | - | csv:101220863 | 307.375 |