Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0550 ATGGCGACGAGGAATCGAACCGCGCAGTTCAGAAGGCTGAGGGACGCCGTGAAGAGCGTCCGTGCTCCGTTATCTTCTTCGGCCGCTGGTTCGAGCGGTCCGGTGATTGAGATGGTCAGTTCGTCTCTTCTTCGTTCTAACCGCTCACCTTCTTACGCTCCTCTTAGCACGGAAGATCCAGGACCTTCAAGCAGTGATGCATTTAAGGTGGGTCTACCCCCAGCTTGGGTGGATGATACAGAAGAAATATCGGTTAATATACAAAATATTCGTCGGAAGATGGCGGAGTTGGTCAAAGCTCATTCTAAAGCTTTATTGCCTTCTTTTGCTGATGACAAAGAAGATCAACATACAATTGAGGCACTTACACAAGAGATTACTAATCTTCTGAAAATCTCTGAGAAGAGGTTGAAGAAAATTTCAAGTACTGGGTCCTCCGAGGATATTAACATTAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAAAATCTTTCTATGGACCTTCGTAGAAGACAGTCAATGTACTTGAAACGTCTTCAGCAACAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATCTGAATGGCAGCAAAAGTCTACATGAGGATGATGAATATGGTGGATTTGGAATCAACGAAAACCAGACGATGACATTAGGAATCGACGAGCAGCACATGCAGGGGAGGGATAAAGAGATTAGACAGGTTGTGAAATCAGTGAATGAACTCGCACAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACTATTGTCGATAGGATCGACCACAATATTCAGAATGTTGCTGTATCCGTGGAGGAGGGCTATAAACAGCTTCAGAAGGCAGAGAAGTCTCAGAAAAGTGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTTGTGATGCTGGTTCTGTTGATACTCAAGGAGATAATTATGTAA 969 43.55 MATRNRTAQFRRLRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSNRSPSYAPLSTEDPGPSSSDAFKVGLPPAWVDDTEEISVNIQNIRRKMAELVKAHSKALLPSFADDKEDQHTIEALTQEITNLLKISEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGSKSLHEDDEYGGFGINENQTMTLGIDEQHMQGRDKEIRQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGYKQLQKAEKSQKSGGMVKCATVLVIMCFVMLVLLILKEIIM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4193985 4198818 - Sed0005074.1 Sed07g0550 719414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0550 322 PANTHER SYNTAXIN 83 307 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed07g0550 322 CDD SNARE_syntaxin16 232 287 - -
Sed07g0550 322 MobiDBLite consensus disorder prediction 46 69 - -
Sed07g0550 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed07g0550 322 Gene3D - 73 280 - -
Sed07g0550 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Sed07g0550 322 MobiDBLite consensus disorder prediction 46 63 - -
Sed07g0550 322 SMART SynN_4 67 182 IPR006011 GO:0016020(InterPro)
Sed07g0550 322 SMART tSNARE_6 221 288 IPR000727 -
Sed07g0550 322 Pfam SNARE domain 262 314 IPR000727 -
Sed07g0550 322 FunFam Syntaxin-43 73 280 - -
Sed07g0550 322 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0550 Sed-Chr7:4193985 Sed11g0395 Sed-Chr11:3785915 2.50E-105 dispersed
Sed07g0550 Sed-Chr7:4193985 Sed07g0551 Sed-Chr7:4193985 8.80E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0550 K08489 - csv:101204192 538.88