Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0557 ATGGCTTCCGATTCTCATGCCGGTCTTCTCTGTAATGCTGGAGCCGGTGCTGCTGCTGGAGTTCTTGCTGCTACATTCGTGTGCCCTTTGGATGTTATCAAGACTAGATTTCAGGTTCATGGACGGCCAAATTTTGGAAAAGGGAGTCTTATAGTTGGTAGTCTGAAACAAATTGCTCATAAGGAGGGGCTACGTGGAATGTATCGAGGACTCTCGCCTACTGTGATTGCTTTACTTCCTAACTGGGCTGTTTATTTCACAATCTATGGACAGCTTAAAAGTTTGCTTGGCTCTGAGGATGAAAGTCATCAGCTTTCAATAGGTGCTAATATGTTGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACCAACCCTCTATGGGTAGTTAAGACCAGACTTCAGACGCAGGGAATGAAATCTGGTGCGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTATGAAGAAGGCATCCGTGGATTGTACAGTGGTCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTCACAATTCAGTTTCCAACTTATGAGAAAATAAAAAGTTATTTGGCTAGCAGAGATAATACGACGACTGATAAACTCACAGCACGTGATGTTGCGGTTGCTTCATCTGTCTCTAAGATATTTGCTTCCACATTGACGTATCCACACGAGGTCGTACGTTCCAGGCTTCAGGAACAAGGGATCCACTCCGAGAAGCGTTATTCTGGCGTAACCGATTGCATCAAGAAAATATTTCAGCAAGATGGCCTTCCCGGTTTCTATCGAGGGTGCGCAACCAACCTTCTTAGGACGACGCCTGCAGCCGTCATCACGTTTACCAGCTTTGAGATGATTCATCGTTTTCTCGTCAATTTATTTCCTCCGGATCCACATCAACACACATTATGA 924 45.56 MASDSHAGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGRPNFGKGSLIVGSLKQIAHKEGLRGMYRGLSPTVIALLPNWAVYFTIYGQLKSLLGSEDESHQLSIGANMLAASGAGAATTIATNPLWVVKTRLQTQGMKSGALPYRNTVSALRRIAYEEGIRGLYSGLVPALAGVSHVTIQFPTYEKIKSYLASRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGIHSEKRYSGVTDCIKKIFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHQHTL 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4209566 4214030 + Sed0027106.1 Sed07g0557 719421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0557 307 PRINTS Mitochondrial carrier protein signature 214 236 IPR002067 GO:0055085(InterPro)
Sed07g0557 307 PRINTS Mitochondrial carrier protein signature 70 90 IPR002067 GO:0055085(InterPro)
Sed07g0557 307 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085(InterPro)
Sed07g0557 307 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085(InterPro)
Sed07g0557 307 PRINTS Mitochondrial carrier protein signature 120 138 IPR002067 GO:0055085(InterPro)
Sed07g0557 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 193 IPR018108 -
Sed07g0557 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 205 293 IPR018108 -
Sed07g0557 307 Gene3D Mitochondrial carrier domain 101 297 IPR023395 -
Sed07g0557 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 95 IPR018108 -
Sed07g0557 307 Pfam Mitochondrial carrier protein 210 296 IPR018108 -
Sed07g0557 307 Pfam Mitochondrial carrier protein 104 196 IPR018108 -
Sed07g0557 307 Pfam Mitochondrial carrier protein 9 98 IPR018108 -
Sed07g0557 307 Gene3D Mitochondrial carrier domain 1 100 IPR023395 -
Sed07g0557 307 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 101 - -
Sed07g0557 307 SUPERFAMILY Mitochondrial carrier 8 289 IPR023395 -
Sed07g0557 307 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 8 298 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Sed07g0557 307 FunFam NAD+ transporter 102 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1162 Sed-Chr3:7204832 Sed07g0557 Sed-Chr7:4209566 2.60E-114 dispersed
Sed03g1163 Sed-Chr3:7204832 Sed07g0557 Sed-Chr7:4209566 5.50E-73 dispersed
Sed07g0557 Sed-Chr7:4209566 Sed10g0960 Sed-Chr10:7835883 2.00E-48 dispersed
Sed07g0557 Sed-Chr7:4209566 Sed07g0813 Sed-Chr7:6006815 5.40E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0557 K15115 - csv:101204681 523.472