Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0564 ATGGCGGCCACACCATTCATCTACTTTCTCGTCCTCCTCTGCGTCTCCACCGCCGTCTCCGCCGCCGCCGCAACCCAAACCGGGTCGGTCTGCAGGTCGACCCTGGACCCGGCGTTCTGCAAAACCGCCCTCCCGAACCAAACCGGCAATGTGTACGCGTACGGGCGGTCGTCGGTGAGGAAATCGCTGTCGTCGTCGCAGAAGTTTCTGCGGACGGTGGAGAAGCAGCTCCGGGGGAGGGCGTGGCTAACGGTGGGGGCGGTGAGGGCGCTGGAGGATTGCCAGCTATTAGCCGGGTTGAACATCGATTACTTGGCGGCGGCGATGACGACGGTGGACCGGACGAGCTCGGCGTTGCCGGAGATGAAGGCGGAGGAGGTGGCGAGCCTGTTGAGTGCGCTGTTGACGAACCAGCAGACGTGTATGGATGGGCTGAAGGCGACGGCGGGTTCTTGGTCTCTCAAAAATGGACTCTCTCTCCCACTTGCTACTGACACCAAACTCTACTCTATGTCCTTGGCTCTATTTACCAAAGGTTGGGTACCGAAGAAAAAGAAAAGGTCGACATGGAAGGGGGCCGGAAAACAGGGCGGGTTCGGAAACGGCCGAATGTCGGTAAAAATGTCGAGCAGAGCCAAAGCGATCTACGAGGCGGCGGCTCGACGGAATCTGCAACAGAGCAACGACGAGGACGGCGGCGACGACCAGATATCGGTTCGGGACATCGTGGTGGTGAGCCAGGATGGGAGCGGGAATTTCACGACGATTAACGAGGCGATCGCGGCGGCGCCGAACAACTCTGCTCCGACGGAGGGGTATTTCTTGATCTTTGTGTCGGCCGGAGTTTATGAAGAGTATGTTTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGGATTAATCAGACCGTTATTACCGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACCTTTGCGGTGGTAGGCCCAGGATTCGTAGCAGTAAACATGACATTCAGAAACACAGCCGGAGCAGAAAAGCACCAAGCCGTGGCGGTCCGGAGCGGCGCCGACTTATCGACGTTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACATTATACACCCACTCCCTCCGCCAGTTCTACCGCGACTGCGACATCTACGGAACCGTCGACTTCATCTTCGGCAATGCAGCCGTCGTCTTCCAAAACTGCAACATCCACCCCCGCCTTCCCATGGCCAACCAGTTCAACGCCATCACCGCCCAAGGCCGCACCGACCCGAATCAGAACACCGGCACCTCGATCCAGAACTGTCGGATCACGCCCGCCGACGACCTCGCCAATGCCACTGCTGTCAAGACCTTCCTCGGCCGGCCGTGGAAGGAGTTCTCCCGGACGGTTTATTTGCAGAATTTTATGGATGGTTTTATTAATCCGGCTGGGTGGAGGGCTTGGGATGGGGAGTTTGCTCTTAATACTTCGTATTATGCTGAGTTTGGGAATTTTGGACCGGGTTCGAACACGTCCGAGCGGGTTAATTGGACCGGGTTTCATTTGATTAATGATACTGATGCTGGGAATTTTACGGCGGCCAGTTTTGTGTTGGCCGATGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGTGGCTTGACGGAGTAG 1671 57.03 MAATPFIYFLVLLCVSTAVSAAAATQTGSVCRSTLDPAFCKTALPNQTGNVYAYGRSSVRKSLSSSQKFLRTVEKQLRGRAWLTVGAVRALEDCQLLAGLNIDYLAAAMTTVDRTSSALPEMKAEEVASLLSALLTNQQTCMDGLKATAGSWSLKNGLSLPLATDTKLYSMSLALFTKGWVPKKKKRSTWKGAGKQGGFGNGRMSVKMSSRAKAIYEAAARRNLQQSNDEDGGDDQISVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTEGYFLIFVSAGVYEEYVSIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAEKHQAVAVRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIHPRLPMANQFNAITAQGRTDPNQNTGTSIQNCRITPADDLANATAVKTFLGRPWKEFSRTVYLQNFMDGFINPAGWRAWDGEFALNTSYYAEFGNFGPGSNTSERVNWTGFHLINDTDAGNFTAASFVLADDWLPQTGVPYTSGLTE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4232363 4236474 - Sed0022840.1 Sed07g0564 719428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0564 556 PANTHER PECTINESTERASE 9 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g0564 556 Pfam Pectinesterase 243 538 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g0564 556 FunFam Pectinesterase 28 178 - -
Sed07g0564 556 FunFam Pectinesterase 236 554 - -
Sed07g0564 556 CDD PMEI-like_3 29 180 - -
Sed07g0564 556 Gene3D - 237 554 IPR012334 -
Sed07g0564 556 SMART PMEI_2 22 175 IPR006501 GO:0004857(InterPro)
Sed07g0564 556 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Sed07g0564 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Sed07g0564 556 Pfam Plant invertase/pectin methylesterase inhibitor 29 175 IPR006501 GO:0004857(InterPro)
Sed07g0564 556 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Sed07g0564 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3353 Sed-Chr5:42806010 Sed07g0564 Sed-Chr7:4232363 9.10E-148 dispersed
Sed07g0564 Sed-Chr7:4232363 Sed13g1545 Sed-Chr13:20633207 7.00E-172 dispersed
Sed07g0564 Sed-Chr7:4232363 Sed07g0565 Sed-Chr7:4262324 3.10E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0564 K01051 - csv:101205321 906.36