Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0565 ATGTCTCTGTTTCAGACAATGTACGGCCTCAAAAACAGAGCTCAAATCACTTCAAATCCCACCTCCATTTCCGCCATTGTCACCTTCTCCTTCTTCTTCATCCTCTTCTCTTCAAAACCCATTTCTTCAAATCCCCAAATCATTCACAATCAGCAAACCCCTCTCTCCCTCTGCAATGGCACTCTGTTTCCAGACCTCTGTTTCTCCAAACTCTCCTCTTTCCCACAATTGTCTTCCCTCTCGCCGGAAAAACTCGCCGGCGCCGCCCTCAACTTCACCTCCGACGAATTCCACCGCGCCTACGCCAACTGCACCAAGCTCAAGTCCCTCCTCTACGGCAGCCTGAACCCGACCGACCGCCACGCCCTCGACGACTGCCTCGAGCTTCTCGACGGCAGCATTGCCGAGCTCCAAGCTTCCATTTCCGATCTGGCGCCGTCGGAGTGCGCCGCCAGCCACTCCCACGACCTGTTGACTTTGGTCAGCGCCGCCATGACCAACCACCGGACTTGCATCGACGGATTTTACAACAGCTCTGGGGATGTGAGGAGCCGGGTGGGGATGTATTTTGGGGAAAAACTTGTGCGGCATTTGAGCATTGATTTGGCGATGTTGAAGAGAATCCCTGGAGTTGATCGGGCGGCGGCGGAGGTGTTTCCGGAGTATGGGGCGGTGAGCGGTGGGTTTCCGACGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACCAAGTTTGATTTGGTGGTGGCCAAGGACGGCTCCGGGAATTTCACCACCGTCGGTGAGGCCGTCGCCGCCGCTCCGAACTCCAGCGCCACCAGGTTCGTAATATACATAAAAGCAGGGGCGTATTTTGAAAACGTGGAAATAGAAAGGAAAAAGACGAACTTGATGTTCGTCGGCGACGGGATCGGGAAAACGCTCATAAAGGGCGACCGGAACGTCGTCGACGGCTGGACCACTTTCCGATCAGCCACTGTCGCGGCGGTTGGCCCCGGGTTCATAGCCAAAGGCATAACATTTGAAAACTACGCCGGTCCGAGCAAGCACCAAGCCGTAGCCTTTCGAAGCAACTCCGACTTCTCAGCATTTTACCAATGCAGCTTTATCGGCTATCAAGACACGCTCTACGTCCACTCCCTCCGCCAATTCTACCGCGACTGCGACGTCTACGGTACCATCGACTTTATCTTCGGCAATGCTGCTGTCGTTTTCCAAAATTGCAACCTCTACGCCCGAAAACCCAACTCGAACCAACGCAACATATTCACTGCCCAAGGTCGTGATGACCCGAACCAGAACACTGGAATCTCTATCTTGAATTGTAAGGTTGAAGCTGCCTCTGATTTGATTCCGGTTCTTTCAACGTTCAAGACTTACTTGGGCCGGCCTTGGAAGCTTTACTCGAGGACGGTTTTTCTTCGGTCGTTTATTGGGCAGTTGGTCGACCCAGCCGGGTGGCTTGAGTGGAATGGGACGTTTGCATTGGATACTTTGTACTATGGGGAGTATTTGAACCGGGGGCCTGGATCGAATACGACTGCTCGAGTTACATGGCCGGGTTATCGGGTGATTACTAACTCGACAGAGGCAAGCCAGTTTACCGTGGATGCGTTTATACAGGGAAGCTCGTGGCTCGATTCGACCGGGATTCCGTTCTTCTCCGGTTTGGTTTGA 1692 53.66 MSLFQTMYGLKNRAQITSNPTSISAIVTFSFFFILFSSKPISSNPQIIHNQQTPLSLCNGTLFPDLCFSKLSSFPQLSSLSPEKLAGAALNFTSDEFHRAYANCTKLKSLLYGSLNPTDRHALDDCLELLDGSIAELQASISDLAPSECAASHSHDLLTLVSAAMTNHRTCIDGFYNSSGDVRSRVGMYFGEKLVRHLSIDLAMLKRIPGVDRAAAEVFPEYGAVSGGFPTWVSVKDRRLLQAAVNETKFDLVVAKDGSGNFTTVGEAVAAAPNSSATRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGDRNVVDGWTTFRSATVAAVGPGFIAKGITFENYAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRDCDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGRDDPNQNTGISILNCKVEAASDLIPVLSTFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNTTARVTWPGYRVITNSTEASQFTVDAFIQGSSWLDSTGIPFFSGLV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4262324 4266358 + Sed0010801.1 Sed07g0565 719429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0565 563 PANTHER PECTINESTERASE 29 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g0565 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Sed07g0565 563 Gene3D - 245 562 IPR012334 -
Sed07g0565 563 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857(InterPro)
Sed07g0565 563 SUPERFAMILY Pectin lyase-like 249 561 IPR011050 -
Sed07g0565 563 NCBIfam pectinesterase inhibitor domain 27 204 IPR006501 GO:0004857(InterPro)
Sed07g0565 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 210 IPR035513 -
Sed07g0565 563 CDD PMEI-like_3 56 210 - -
Sed07g0565 563 FunFam Pectinesterase 245 562 - -
Sed07g0565 563 Pfam Pectinesterase 251 547 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g0565 563 SMART PMEI_2 49 204 IPR006501 GO:0004857(InterPro)
Sed07g0565 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3493 Sed-Chr1:64019311 Sed07g0565 Sed-Chr7:4262324 1.10E-138 dispersed
Sed04g0442 Sed-Chr4:3267928 Sed07g0565 Sed-Chr7:4262324 3.30E-118 dispersed
Sed04g1060 Sed-Chr4:14840518 Sed07g0565 Sed-Chr7:4262324 4.70E-122 dispersed
Sed07g0565 Sed-Chr7:4262324 Sed09g1726 Sed-Chr9:40469150 5.40E-140 dispersed
Sed07g0564 Sed-Chr7:4232363 Sed07g0565 Sed-Chr7:4262324 3.10E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0565 K01051 - csv:101205557 952.97