Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0591 ATGGCGGAATCCGAGCGTCGCGCGAAACGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATTATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTTTGAACCTTGTAATTGGGCCTAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACTAGTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTAAGAGGGAACACTAAAGAGGAGAAGATTATGATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTCCCGAAGAAAGATGTAGCTGCAATCATTCAACAATTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGAGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGCACTTGTTGAGAAAAGCCATGACATAAAAAATATTGAACGAGCTGTTGAGAAAAATGGGGACACCTTACATCAGCTAAAGGCATTAAATGCTGAGCAGGAGAAGGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTCGAGTCCATGAAAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCCGAATACATGGAAGTTAAAGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACATTTTGAATGAATTAAAGGAGCCAATTGAGAAGCAAAAAAAGGAAAAGGCAAAGTTGGATGCTAAAACTAGAAAGTATAGTTCTCTCATTAATGACAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCGTTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAAATGGAAGATTTAAGGAAACAAGAAGAATCCCTTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGACCTTCAGAATTTGCGTCCTTACGAACATCCCAAGGAAGAAATTGAAGGGCTCCGTGCTCAAATTTTGGAGCTGGAAGATTCTGCGAGTCAGAAAAGAGTTTTGAAGTCAGAGATTGAAAGAAATATATACCAAAAAAGAAATAGTTTAAGGCAATGCCTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGGAATTCTGGAGCAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCAATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTACTAGAGGTTAATGTATCAAATCGGATTCATGCTGACTACTTAGAAGGTCATATTCCATCCTACGTATGGAAGGCCTTCATAACTCAAGATTCTGATGATCGTGACATCATGGTAAAAAACTTGGGCTCATTTGGTGTTCCTATATTAAACTATGTGGGAGGCGAAAGGCGCACAAATCAGCATTTCGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAGTTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAACCATTATCGATGGTCTCGCTCTAGATACGGGGGTCATATGTCTGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAATTTGGATGCGGGAGAAATTGATGAGCTTCGGTCCAGGAAAAGTGAGCTAGAACAGTCTGTCTCTGCCTTAGAAGATAACTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTCCGCAAACATCGGGATGACATTTTATTTACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGTATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGAGGGAAGATGACTTGGATACTGTTTTGGCCAAGCTTGTCGACCAAGCTGCAAATTTCAATATTCAAAGGTTCCATTGTGCAATTGAAATTAAGACTTTGCTTGTGAAGGCTGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATTGAAGCTGAATCAAAGATCAAAGAAGTGGAGGTAAATCTGAAGCAGCATGAAAAGCTTGCTCTGCAAGCATCTGTGCAGTTCGAGTACTGCAAGAAGGAAGTTGAGGACTATCGACAGCAACTTTTAGTTGCTAAGAAGCATGCAGAATCTATTGCTGTGATTACACCTGACCTTGAGAAGGAATTTCTTGAGATGGCTACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATATTTCGCAAGCTAATTCCATTCTATTCTTAAACCATAATGTGCTCGAGGAATATGAACATCGTCAGCATCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTGAGGAAGTTTACGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGTGACTTTTAGCCGCAATTTTCAAGAGATGGCTGTAGCTGGAGAAGTCTTATTGGATGAGCACGATATGGACTTCGATCAATTTGGGATACTCATTAAAGTAAAATTCAGACAAGCAGGTCAGCTCCAGGTTCTCAGTGCACATCACCAATCTGGAGGGGAACGCTCCGTGTCGACGATTCTGTATCTTGTCTCTCTTCAAGACCTTACTAACTGCCCGTTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGTCAAACGAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTCCCAGAACTGGAATATAGTGAGGCCTGTAGCATTCTAAATATAATGAATGGTCCATGGATCGAACAGCCCTCTAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTGATGAACTACGTAGGAGAAAGCCGATGTTGA 3162 40.67 MAESERRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKIMITRKMDTHNKSEWLFNGKVVPKKDVAAIIQQFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVEKSHDIKNIERAVEKNGDTLHQLKALNAEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANILNELKEPIEKQKKEKAKLDAKTRKYSSLINDNHKKRMELQETENRLGVQVQGKLKEMEDLRKQEESLQQRILQAKEELEAAELDLQNLRPYEHPKEEIEGLRAQILELEDSASQKRVLKSEIERNIYQKRNSLRQCLDRLKDMENTNTKLLQALRNSGAEKIFEAYHWLQEHRNEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKAFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQVFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDELRSRKSELEQSVSALEDNCKSCQNELRLIEDEEAKLRKHRDDILFTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVLAKLVDQAANFNIQRFHCAIEIKTLLVKAVSYRQSLTKNHMSSIEAESKIKEVEVNLKQHEKLALQASVQFEYCKKEVEDYRQQLLVAKKHAESIAVITPDLEKEFLEMATTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQHQINTIARKLEADKHELRKFTAEVDELKGNWLPTLRKLVSQINVTFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4494478 4511150 + Sed0026614.1 Sed07g0591 719455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0591 1053 Coils Coil 408 428 - -
Sed07g0591 1053 Coils Coil 300 320 - -
Sed07g0591 1053 Coils Coil 248 296 - -
Sed07g0591 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Sed07g0591 1053 Gene3D - 847 1022 IPR027417 -
Sed07g0591 1053 Coils Coil 842 879 - -
Sed07g0591 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(InterPro)|GO:0000724(PANTHER)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed07g0591 1053 Coils Coil 747 774 - -
Sed07g0591 1053 Coils Coil 622 666 - -
Sed07g0591 1053 Coils Coil 209 229 - -
Sed07g0591 1053 Coils Coil 671 698 - -
Sed07g0591 1053 Gene3D - 24 212 IPR027417 -
Sed07g0591 1053 Coils Coil 325 359 - -
Sed07g0591 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Sed07g0591 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0591 K22803 - - csv:101210248 1890.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0591 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 2.10E-20 dispersed
Sed07g0591 Sed-Chr7:4494478 Sed07g0592 Sed-Chr7:4494478 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0591 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 68.2 0.0e+00 1367.8
Sed07g0592 . 2 936 Structural Maintenance of Chromosomes family AT5G15920 66.2 0.0e+00 1181.0
Sed13g0248 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.0 0.0e+00 1249.2
Sed13g0248 . 2 1052 Structural Maintenance of Chromosomes family AT5G61460 65.0 0.0e+00 1311.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32