Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0592 ATGATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTCCCGAAGAAAGATGTAGCTGCAATCATTCAACAATTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGAGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGCACTTGTTGAGAAAAGCCATGACATAAAAAATATTGAACGAGCTGTTGAGAAAAATGGGGACACCTTACATCAGCTAAAGGCATTAAATGCTGAGCAGGAGAAGGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTCGAGTCCATGAAAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCCGAATACATGGAAGTTAAAGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACATTTTGAATGAATTAAAGGAGCCAATTGAGAAGCAAAAAAAGGAAAAGGCAAAGTTGGATGCTAAAACTAGAAAGTATAGTTCTCTCATTAATGACAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCGTTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAAATGGAAGATTTAAGGAAACAAGAAGAATCCCTTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGACCTTCAGAATTTGCGTCCTTACGAACATCCCAAGGAAGAAATTGAAGGGCTCCGTGCTCAAATTTTGGAGCTGGAAGATTCTGCGAGTCAGAAAAGAGTTTTGAAGTCAGAGATTGAAAGAAATATATACCAAAAAAGAAATAGTTTAAGGCAATGCCTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGGAATTCTGGAGCAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCAATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTACTAGAGGTTAATGTATCAAATCGGATTCATGCTGACTACTTAGAAGGTCATATTCCATCCTACGTATGGAAGGCCTTCATAACTCAAGATTCTGATGATCGTGACATCATGGTAAAAAACTTGGGCTCATTTGGTGTTCCTATATTAAACTATGTGGGAGGCGAAAGGCGCACAAATCAGCATTTCGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAGTTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAACCATTATCGATGGTCTCGCTCTAGATACGGGGGTCATATGTCTGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAATTTGGATGCGGGAGAAATTGATGAGCTTCGGTCCAGGAAAAGTGAGCTAGAACAGTCTGTCTCTGCCTTAGAAGATAACTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTCCGCAAACATCGGGATGACATTTTATTTACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGTATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGAGGGAAGATGACTTGGATACTGTTTTGGCCAAGCTTGTCGACCAAGCTGCAAATTTCAATATTCAAAGGTTCCATTGTGCAATTGAAATTAAGACTTTGCTTGTGAAGGCTGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATTGAAGCTGAATCAAAGATCAAAGAAGTGGAGGTAAATCTGAAGCAGCATGAAAAGCTTGCTCTGCAAGCATCTGTGCAGTTCGAGTACTGCAAGAAGGAAGTTGAGGACTATCGACAGCAACTTTTAGTTGCTAAGAAGCATGCAGAATCTATTGCTGTGATTACACCTGACCTTGAGAAGGAATTTCTTGAGATGGCTACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATATTTCGCAAGCTAATTCCATTCTATTCTTAAACCATAATGTGCTCGAGGAATATGAACATCGTCAGCATCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTGAGGAAGTTTACGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGTGACTTTTAGCCGCAATTTTCAAGAGATGGCTGTAGCTGGAGAAGTCTTATTGGATGAGCACGATATGGACTTCGATCAATTTGGGATACTCATTAAAGTAAAATTCAGACAAGCAGGTCAGCTCCAGGTTCTCAGTGCACATCACCAATCTGGAGGGGAACGCTCCGTGTCGACGATTCTGTATCTTGTCTCTCTTCAAGACCTTACTAACTGCCCGTTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGTCAAACGAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTCCCAGAACTGGAATATAGTGAGGCCTGTAGCATTCTAAATATAATGAATGGTCCATGGATCGAACAGCCCTCTAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTGATGAACTACGTAGGAGAAAGCCGATGTTGA 2838 40.13 MITRKMDTHNKSEWLFNGKVVPKKDVAAIIQQFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVEKSHDIKNIERAVEKNGDTLHQLKALNAEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANILNELKEPIEKQKKEKAKLDAKTRKYSSLINDNHKKRMELQETENRLGVQVQGKLKEMEDLRKQEESLQQRILQAKEELEAAELDLQNLRPYEHPKEEIEGLRAQILELEDSASQKRVLKSEIERNIYQKRNSLRQCLDRLKDMENTNTKLLQALRNSGAEKIFEAYHWLQEHRNEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKAFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQVFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDELRSRKSELEQSVSALEDNCKSCQNELRLIEDEEAKLRKHRDDILFTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVLAKLVDQAANFNIQRFHCAIEIKTLLVKAVSYRQSLTKNHMSSIEAESKIKEVEVNLKQHEKLALQASVQFEYCKKEVEDYRQQLLVAKKHAESIAVITPDLEKEFLEMATTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQHQINTIARKLEADKHELRKFTAEVDELKGNWLPTLRKLVSQINVTFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4494478 4511150 + Sed0026614.2 Sed07g0592 719456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0592 945 Coils Coil 140 188 - -
Sed07g0592 945 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 2 937 IPR027131 GO:0000724(InterPro)|GO:0000724(PANTHER)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed07g0592 945 Coils Coil 217 251 - -
Sed07g0592 945 Coils Coil 300 320 - -
Sed07g0592 945 Coils Coil 563 590 - -
Sed07g0592 945 Coils Coil 734 771 - -
Sed07g0592 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 896 IPR027417 -
Sed07g0592 945 Coils Coil 639 666 - -
Sed07g0592 945 Gene3D - 1 105 IPR027417 -
Sed07g0592 945 Coils Coil 514 558 - -
Sed07g0592 945 Coils Coil 101 121 - -
Sed07g0592 945 FunFam Structural maintenance of chromosomes 5 741 912 - -
Sed07g0592 945 Coils Coil 192 212 - -
Sed07g0592 945 Gene3D - 739 914 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0592 K22803 - - csv:101210248 1682.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0592 Sed-Chr7:4494478 Sed13g0248 Sed-Chr13:1639361 8.00E-11 dispersed
Sed07g0591 Sed-Chr7:4494478 Sed07g0592 Sed-Chr7:4494478 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0591 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 68.2 0.0e+00 1367.8
Sed07g0592 . 2 936 Structural Maintenance of Chromosomes family AT5G15920 66.2 0.0e+00 1181.0
Sed13g0248 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 63.0 0.0e+00 1249.2
Sed13g0248 . 2 1052 Structural Maintenance of Chromosomes family AT5G61460 65.0 0.0e+00 1311.6