Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g0603 | ATGATGGAATCCGGTAATCTCACCTCCTCCTCCTTGCCCCCTTCGATTTTTGTCGGAAAGATCGGTCTCCGATCACTCCTCGATGTCCAAATCTTAGAGATCTCTTTTGCTCTTTTAGTGTTCTTCACCATCCATGTTATTAGACAAAAGCGACAATATGGTTTACCTGTTTGGCCAATCGTCGGGATGTTACCGGCTCTGATCACTGCAGCACGTGGAAATCTCTATGAATGGATTACACGCCTCCTTCAGCGTCATAAAGGGACGTTTCAGTTTCGAGGTCCATGGTTTAGTAGCCTCAACTGTGTCATCACAGCCGATCCTCGAAATTTAGAGCATCTTCTCAAGACCAAATTCTCTTCCTACCCCAAAGGGCCATTCTTCCGCACCACAGTAAGAGACCTTCTTGGTGACGGAATATTCGGTGCCGATGATGAAACGTGGCAGCAGCAAAGAAAGGTGGCGAGCATCGAGTTTCACTCGGCAAGGTTCCGGCAAATGACTGTGGAATCGCTGGTGGAGCTCGTGCAATTGAGGCTTGAGAGGGTGTTGGAGGATTTTGCAGGGCGGTCGGCGACCGTGGACCTGCAGGATGTTCTTCTGAGGCTGACTTTTGACAATGTGTGTATGATAGCCTTTGGGGTTGATCCTGGCTGCTTGCGCAGCGGCTTGACGGAAATTCCGTTTGCTAAGGCCTTCGAGGATGCTACTGAAGCCACTGTTTTGCGGTTCATCACGCCTACATTCATATGGAAGACCATGAGGTACCTGAACTTGGGAATGGAGAAGAAGCTGAAACAATCAATAAAAGCCGTCGACGAATTTGCGGAGAACGTGATTCAAACACGAAAGACAGAACTCTCCGCGGCGGCGCAACCGCAAGTCGATAACCAACGATCCGACCTACTCACTGTGTTCATGAGACTCAGAGACGAGCAAGGGCGGCCATTCTCCGACAAGTTCCTCAGAGATATATGCGTCAATTTCATACTCGCCGGAAGAGACACATCTTCGGTTGCATTGAGTTGGTTCTTCTGGTTGCTCGATCAAAATCCCGATGTGGAAGAGAAAATTCTAGCAGAAATTGGCCGAATCGTCGCCGATCGAGAAGAGGCAAAAACAAGAGAGATTCGATTCGGTTCGCTAATGTTTAAACCAGACGAAATCAAGAGAATGGAGTATCTGCACGCGGCGATTTCCGAAACCCTAAGATTGTATCCATCCGTTCCAGTCGATCACAAAGAGGTCGTGGAGGACGATGTATTTCCGGACGGAACAAATCTGAAGAAAGGAACGAAAATCATCTACGCAATATACGCTATGGGGAGAATGGAAGCGATTTGGGGGAAAGATTGTGGCGAATTCAAACCTGAGAGATGGATGAGAGACGGTCGGTTCATGAGCGAATCGGCGTATCGATTCGCCGCCTTCAACGGCGGTCCTCGGCTGTGTCTCGGGAAGGATTTTGCGTACTATCAAATGAAATACGTCGCCGCTTCGATCATCGGCCGGTACCGGGTGGCGGTGGCGGCGGGGCATCCGGTGGAGCCGAAGCTTGCCCTAACTTTCTACATGAAGAACGGCTTAAGGGTTAATTTGATTAAACGAGATGAGGGGCAGATTAGGAAATATCTGAAGTTAAATTGA | 1647 | 49.06 | MMESGNLTSSSLPPSIFVGKIGLRSLLDVQILEISFALLVFFTIHVIRQKRQYGLPVWPIVGMLPALITAARGNLYEWITRLLQRHKGTFQFRGPWFSSLNCVITADPRNLEHLLKTKFSSYPKGPFFRTTVRDLLGDGIFGADDETWQQQRKVASIEFHSARFRQMTVESLVELVQLRLERVLEDFAGRSATVDLQDVLLRLTFDNVCMIAFGVDPGCLRSGLTEIPFAKAFEDATEATVLRFITPTFIWKTMRYLNLGMEKKLKQSIKAVDEFAENVIQTRKTELSAAAQPQVDNQRSDLLTVFMRLRDEQGRPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDQNPDVEEKILAEIGRIVADREEAKTREIRFGSLMFKPDEIKRMEYLHAAISETLRLYPSVPVDHKEVVEDDVFPDGTNLKKGTKIIYAIYAMGRMEAIWGKDCGEFKPERWMRDGRFMSESAYRFAAFNGGPRLCLGKDFAYYQMKYVAASIIGRYRVAVAAGHPVEPKLALTFYMKNGLRVNLIKRDEGQIRKYLKLN | 548 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4565135 | 4567741 | + | Sed0024988.1 | Sed07g0603 | 719467 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g0603 | 548 | PANTHER | CYTOCHROME P450 | 44 | 529 | - | - | |
| Sed07g0603 | 548 | SUPERFAMILY | Cytochrome P450 | 54 | 536 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | FunFam | Cytochrome P450 | 46 | 539 | - | - | |
| Sed07g0603 | 548 | Gene3D | Cytochrome P450 | 51 | 545 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | CDD | CYP86A | 90 | 529 | - | - | |
| Sed07g0603 | 548 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 477 | 486 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed07g0603 | 548 | PRINTS | E-class P450 group IV signature | 484 | 502 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | E-class P450 group IV signature | 392 | 408 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | E-class P450 group IV signature | 323 | 349 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | Pfam | Cytochrome P450 | 55 | 521 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | P450 superfamily signature | 397 | 408 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | P450 superfamily signature | 475 | 484 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | P450 superfamily signature | 484 | 495 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0603 | 548 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2239 | Sed-Chr4:36137951 | Sed07g0603 | Sed-Chr7:4565135 | 1.60E-123 | dispersed | |
| Sed07g0603 | Sed-Chr7:4565135 | Sed10g0443 | Sed-Chr10:2777544 | 2.00E-99 | dispersed | |
| Sed07g0603 | Sed-Chr7:4565135 | Sed09g0050 | Sed-Chr9:409158 | 4.80E-125 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g0603 | K15402 | - | csv:101212202 | 943.725 |