Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0617 ATGGACGATAGCTGCGCGGTGTGTGCCGATGCTCTCGAATGGGTTGCCTATGGCGCTTGTGGCCATCGCGATGTCTGCTCCACTTGCGTCGCTCGTCTTCGATTTATCTGCGATGACCGCCATTGCTGCATCTGCAAGTCCGAATCCGCCGTCGTCTTCGTCACCAAGGCACTAGGAGATTATACAAGGACGATTAACGACTTCACAGTTTTTCCTTCTGAACCTCGAGAAGGTCGTAGTGGGTCCTATTGGTATCATGAAGACACGCAAACATTTTTTGATGATGTTGACCACTACAAGATGATAAAAGCAATGTGCAGGCTGTCATGCAGTGAGTGTGATAAGATAGGTGAAGATCAACCTAATGATGGTTCAAAGCGCCGGGGAAGATTTCGAAACATTGAGCAGTTAAAGGGTCATTTGTTTCATCGACACAAGTTGTTCATGTGCAGCCTTTGTTTGGAAGGAAGGAAGGTTTTTATTTGTGAACAAAAGCTATATACTAGAGCACAATTGAATTGGCATATACACACCGGTGACTCTGAGGTGGACGGAAGTGAGAGCGAGAGAGGTGGTTTCACCGGGCACCCTTTGTGTGAATTTTGCAGAACTCCTTTTTATGGGGATAATGAGCTGTATACTCATATGTCAACTGAGCATTATACGTGTCACATATGCCAAAGGCAACATCCTGGACAGTATGAATACTATAAGAATTATGATGACCTAGAGATACATTTCCGGCACGGACATTTTCTTTGTGAAGATGAAGCCTGTCTTTCTAAAAAGTTCATAGTGTTCCAATCTGATGCAGAAATGAAGAGGCATAATACTATTGAACATGGTGGCAAGCTATCTCGATCAAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTTTATATCGAAGAAGTAATGAGCAAGATAATCGCCGTGGTAGACGGACGTTTCGTCGTGATTCTTCTGACAATCTACTTTCTTTAGCCATTCAAGAAAGTTTAGAAACAGCCAATGTTGATGACACCAATCATGACCCATTGCCTAGTGGACTAGTAACCTCGGATCAGGGAAATACAAGCAACATTGATCCCGTAATTGAACCATTTGAATCATTAGCAACAACAAATCCTGAATCAGCTTCTAGATACCTTCAAGCCTTGGGCCACTCTAGGAATTCCAAATTGGAGCAATCATCCTTTCCACCACTTTTAACCGCACCTAGCAGCAGCCATCTGAAGCCCGTGCATGACAAAGACGATATCCATAATAACAGTATGGCAGCTCATCTTCGCCGCCAGAGGAAAGTGACTGTTCTGAATTCTGCTCAAGGTTGGTCAAGTCGTGCCCCTGTGCTACCATTGAATAATTCATCTCAAGCTTGGCCTGCAATAAATTTTAACCATCCAACATCAAGCAGTTCTGGGCAGACTAAGGGTGTTGTCACAATCAGTAATGGTCCTTCACCTTCAATCTCTGGTTACTCAAATGCTGCTCAGGCGAATGCCAAGGCTCGATCTAGTTCTTCAAATGGATCAGGTAGTAGCAGTAGGATCAACCACTCTTCTTCTGCTCCCAGTCTCACTAACATGGCCTACACTGAGCCCTCAGTTGATGATTTCCCTCCAGTTTCTGCAGCCGCACAAACACTTAAGGAGCCCTCAAGTAGCCCGAGTGCAATAAACGTGGAAGATATCCAAACAGCAAACAAATCTCTTGTTGAAAAGATGCGTGCTGCTCTTGATTTTGACCAAGATAGATATGCCGTTTTTAGAGATTTATCTGCACAATATCGTGAGGGTCAGATTGACACGGAAATGTATCTAGATTTTGTGCAGCAGTTCGGTTTGTCGCATCTTGTGCTAGAACTGGCTAGGCTCTGTCCCGATGCTCGAAAACAGAAAGAACTTGTGGAGGCCTATCATGCTAGTTTACATAGAGATGTGATCCAAGAAAATGGTTGTGCTCTCGATAGTATTCAATTAAAAGACAAAAGTAAGGGAAAGAAAGGCAAAGGGAAAGCAGTGGATGTTAAAGACAACAGCAGTTCAAAGGACAAATTAGCCGATAGTATCTTGAATAGTGTTCGAGAACTGCAGTCAAGTTTGAGGTCATCAGAGGACAATATAGAGGTACTATCGAAGGGTGATTATCGTGCTGCGAAAGGGAAAAATCGAAGATATCATATGACGAGCAACAAGGTGGGATAG 2208 43.7 MDDSCAVCADALEWVAYGACGHRDVCSTCVARLRFICDDRHCCICKSESAVVFVTKALGDYTRTINDFTVFPSEPREGRSGSYWYHEDTQTFFDDVDHYKMIKAMCRLSCSECDKIGEDQPNDGSKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYTRAQLNWHIHTGDSEVDGSESERGGFTGHPLCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRHGHFLCEDEACLSKKFIVFQSDAEMKRHNTIEHGGKLSRSKRNAALQIPTSFLYRRSNEQDNRRGRRTFRRDSSDNLLSLAIQESLETANVDDTNHDPLPSGLVTSDQGNTSNIDPVIEPFESLATTNPESASRYLQALGHSRNSKLEQSSFPPLLTAPSSSHLKPVHDKDDIHNNSMAAHLRRQRKVTVLNSAQGWSSRAPVLPLNNSSQAWPAINFNHPTSSSSGQTKGVVTISNGPSPSISGYSNAAQANAKARSSSSNGSGSSSRINHSSSAPSLTNMAYTEPSVDDFPPVSAAAQTLKEPSSSPSAINVEDIQTANKSLVEKMRAALDFDQDRYAVFRDLSAQYREGQIDTEMYLDFVQQFGLSHLVLELARLCPDARKQKELVEAYHASLHRDVIQENGCALDSIQLKDKSKGKKGKGKAVDVKDNSSSKDKLADSILNSVRELQSSLRSSEDNIEVLSKGDYRAAKGKNRRYHMTSNKVG 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4674943 4680251 - Sed0004994.1 Sed07g0617 719481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0617 735 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Sed07g0617 735 CDD RING-HC_ZNF598 3 53 IPR041888 -
Sed07g0617 735 SMART c2h2final6 221 251 IPR013087 -
Sed07g0617 735 SMART c2h2final6 252 281 IPR013087 -
Sed07g0617 735 SMART c2h2final6 108 145 IPR013087 -
Sed07g0617 735 SMART c2h2final6 197 220 IPR013087 -
Sed07g0617 735 MobiDBLite consensus disorder prediction 336 361 - -
Sed07g0617 735 PANTHER ZINC FINGER PROTEIN 598 1 726 IPR044288 GO:0016567(PANTHER)|GO:0043022(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0072344(PANTHER)|GO:0072344(InterPro)
Sed07g0617 735 MobiDBLite consensus disorder prediction 390 406 - -
Sed07g0617 735 MobiDBLite consensus disorder prediction 463 539 - -
Sed07g0617 735 MobiDBLite consensus disorder prediction 390 420 - -
Sed07g0617 735 MobiDBLite consensus disorder prediction 463 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0617 Sed-Chr7:4674943 Sed09g1333 Sed-Chr9:37435937 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0617 K22381 - csv:101214376 1185.63