Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0626 ATGGTGGCTGGAGCTGATGTTGTTGTTTGTTCTAAGAGCCTCTTCGTTAAAGAGACTCATCTTGTTGATGAAATTAAACCCATCGATGCTGGAATTTCGATCGATCCGACTCTTAATCGTCCTTCTGAATCTGTTTGTTCGACCTCTCAATTGGATATGAAGAAAAATCCCGAAACCAACGTTGAGACCGGCAGGGAGTTTCCGAGTCTCCGGTCGGGGAGCTTTGCTGATATTGGACCTAGGAGATACATGGAAGATGAACATATAAGGGTAGATGATCTGGGTTCACATTTAGGATCAATCTTTAAGTTTCCCAGTCCAAGTGGTTTCTATGGAGTTTTTGATGGACATGGAGGACCTGAAGCTGCAGCTTTTATCAGAAAGCATGTTCTTAGACTCTTTTTTGAGGATGTTGGGTTTCCTCAAGTGCCTGATGTGGATGATCAAGTCTTACCGGAGGAGTTTGAAAATTTCCACCGAGATGTATTTCTTCTGGCTGATCAAGCTCTCGCCGACGATACGGGTGTCAGTAATTCGTCCGGGACGACTGCCCTGACTGCTCTTGTGCTTGGAAGGCTGCTCATGGTGGCTAATGTTGGAGATTGCCGGGCAGTTCTCAGTCGGGACGGGAAGGCAGTCGATATGTCTCAAGATCACAGGCCGATTTATTCACCAGAGAAGGAAAGAGTAGAAGAGTTGGGTGGCTTCGTCGATGGTGGCTATCTTAACGGCGTTTTATCGGTATCCAGGGCATTGGGGGATTGGGACATGAAGCTCCCCCAGGGTTCTCCTTCCCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTAACAGAGGAGGACGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGATGTGATGTCAAGCCAGCAAGCAGTGGATGTAGTTCGATGGGGGCTTCAGCGACACGATGACCCTGAGCGATGCGCTCGAGATCTTGTCCTGCAGGCTTTACGATCAGACTCATTCGATAATCTCACTGTTGTTGTTGTTTGCTTCTCTAGTTTCTGTCGTGACAACTCTCCACTGCTACAGCAGCGAAAATTGAAATATTGCAGCGTCTCTGCACAGGCCCTTTGTAGCTTGCAGAGATGGTTGAATAACAGTGGATGCCAATGA 1146 47.73 MVAGADVVVCSKSLFVKETHLVDEIKPIDAGISIDPTLNRPSESVCSTSQLDMKKNPETNVETGREFPSLRSGSFADIGPRRYMEDEHIRVDDLGSHLGSIFKFPSPSGFYGVFDGHGGPEAAAFIRKHVLRLFFEDVGFPQVPDVDDQVLPEEFENFHRDVFLLADQALADDTGVSNSSGTTALTALVLGRLLMVANVGDCRAVLSRDGKAVDMSQDHRPIYSPEKERVEELGGFVDGGYLNGVLSVSRALGDWDMKLPQGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVDVVRWGLQRHDDPERCARDLVLQALRSDSFDNLTVVVVCFSSFCRDNSPLLQQRKLKYCSVSAQALCSLQRWLNNSGCQ 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4735366 4737199 - Sed0015857.1 Sed07g0626 719490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0626 381 PANTHER PROTEIN PHOSPHATASE 2C 58 342 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed07g0626 381 CDD PP2Cc 71 342 IPR001932 -
Sed07g0626 381 Gene3D - 49 348 IPR036457 -
Sed07g0626 381 ProSitePatterns PPM-type phosphatase domain signature. 110 118 IPR000222 GO:0043169(InterPro)
Sed07g0626 381 FunFam Probable protein phosphatase 2C 22 55 345 - -
Sed07g0626 381 MobiDBLite consensus disorder prediction 41 66 - -
Sed07g0626 381 ProSiteProfiles PPM-type phosphatase domain profile. 71 342 IPR001932 -
Sed07g0626 381 SMART PP2C_SIG_2 86 342 IPR001932 -
Sed07g0626 381 Pfam Protein phosphatase 2C 81 334 IPR001932 -
Sed07g0626 381 SMART PP2C_4 61 340 IPR001932 -
Sed07g0626 381 SUPERFAMILY PP2C-like 63 343 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3071 Sed-Chr4:41746104 Sed07g0626 Sed-Chr7:4735366 5.30E-98 dispersed
Sed07g0626 Sed-Chr7:4735366 Sed09g0625 Sed-Chr9:7796229 6.60E-97 dispersed
Sed07g0626 Sed-Chr7:4735366 Sed09g1325 Sed-Chr9:37401446 3.30E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0626 K14803 - csv:101216626 617.846