Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0655 ATGGAAACTGGAGAGTCTGTGGCAAAGGTTACAAAGAACATGGGCCTCAATAACTGTCAAATATGTGGAGATAATGTCCGGAAGACTGTGGATGGTGATAAGTTTGTTGCCTGTGATGTCTGCACATTTCCTGTTTGCAGACCATGCTATGAGTACGAGAGAAAAAATGGGAATCAATCTTGTCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGTGTTGCTGTTCTTGGTGATGAAGACGATGTTGAGCTTGATGATGATGATATTGATTTAAATTACATTTCTGAAAGTCACAAACAGAAGCAGAAGATAGCCGAGCGCATGATGAGCTGGCAGATGGCATATGGACAAGCACAAGATTTCCCACCTCCGAATTACGACAAAGAAGTTTCTTTAAATCATATTCCTTTGCTCACCAATGGGCAGGAGGTTTTTGGAGAGCTTTCAGCCTCATCACCCGAGCATCATTTGGTGGCATCACAAGGGCATCCTCGTGGGAAGCCAATATATTCTCTTTCTTTTGCAGCTGATATTAACCAATCGCCTAATGTGCGAGGTGTGGACCCTACAAAAGAGTATAATTCATCCGGGCCGGGAAATGTAGCTTGGAAAGAGAGAGTTGATGGGTGGAAGATGAAGCAGGAGAAGAATGCTGTACCAATGAGCACAACCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCTTGTACAGATGTGCTTGTTGATGACTCCTTATTAAATGACGAAGCTCGCCAGCCTCTCTCAAGAAAGGTTTCTCTTCCGTCATCAAGGATAAACCCTTATCGAATGGTGATTGTTCTCCGGCTTGTGATTCTTGTTTTTTTCTTGCACTACCGAATCACGAATCCAGTACGCAATGCATATGCTCTATGGTTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCAAAGTGGCTTCCTGTAAATCGTGAGACTTATCTTGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCATCACAACTTGCTTCTGTTGACATTTTCGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACCGTGCTATCGATCCTTGCCGTTGACTACCCAGTTGACAAAGTTTCATGTTATGTCTCTGATGATGGAGCTGCCATGTTGACTTTCGAAGCATTATCCGAGACATCAGAGTTTGCAAGGACATGGGTTCCTTTCTGCAAGAAATACAACATCGAGCCTCGGGCTCCTGAATGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCCATCCATCATTTGTCAAAGATCGAAGAGCGATGAAGAGAGAATATGAGGAATTTAAGGTTCGCATCAATGGTCTAGTATCAAAGGCACAGAAGGTTCCCGAAGAAGGGTGGAGCATGCAAGATGGAACTCCGTGGCCCGGAAATAATACTAGAGACCATCCGGGTATGATCCAGGTTTTCTTAGGCCAAAACGGTGGACTTGACTCCGAAGGTAACGAGTTGCCTCGTCTAGTTTATGTATCTCGTGAAAAACGTCCAGGATTTCAACATCATAAGAAAGCTGGTGCAATGAATGCTCTAGTTCGAGTGTCCGCTGTCCTTACTAATGGCCCATTCTTGTTGAATCTTGACTGTGATCATTACATAAACAATAGCAAGGCATTGAGAGAAGCTATGTGTTTCATGATGGATCCAAACCTTGGCAAATATGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAGGAACGATCGATATGCCAATCGTAACACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGTCTGCAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACTGCACTGTATGGTTATGAACCTCCTCTAAAACCGAAGAATCGAAAATCAGGGTTTCTATCTTCACTCTGTGGTGGATCTCGAAAGAACTCAAAATCAAGTAAAAGAAGTCCAGAAAAGAAGAAATCAAGTAAGCATGTGGACCCAACCGTGCCGATTTTCAATCTTGATGACATTGAAGTAGTTGAAGGTGTTGGGTATGATGATGAGAAGGCACTGCTAATGTCACAATTGACCCTCGAGCAAAGGTTTGGCCAATCTGCTGTTTTTGTTGCTTCGACCCTTATGGAAAATGGTGGTGTTCTGCAATCTGCAACGCCCGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAAGACAAAACCGACTGGGGATCAGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATCCTTACGGGATTCAAGATGCATGCCCGTGGTTGGCGGTCGATTTATTGCATGCCAAAGCGTCCTGCCTTTAAAGGGTCTGCACCTATCAATCTTTCAGATCGATTAAACCAAGTGCTTCGATGGGCACTTGGTTCTGTGGAGATTCTTTTGAGTAGGCATTGCCCTATCTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAAAGGTTTGCATATGTGAACACGACAATCTATCCGATCACCGCTATTCCTCTTCTCTTGTATTGTACCTTACCAGCTGTGTGTCTGTTGACAAACAAGTTCATTATTCCGCAGATTAGTAACATTGCAAGTATATGGTTTATATCCCTCTTCATCTCCATCTTTGCGACTGGAATTCTCGAGATGAGATGGAGCGGGGTTGGAATTGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATCGGCGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTCAAGGTTCTTGCTGGAATCGACACCAACTTCACAGTCACGTCCAAGGCATCTGATGAAGAAGGGGACTTTACCGAGCTTTACTTATTTAAATGGACGACTCTTCTCATCCCACCAACAACACTCCTCATCGTAAACTTGGTCGGGGTCGTAGCGGGGATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCATTGTTTGGCAAGCTATTTTTTGCCTTTTGGGTGATCATTCATCTCTATCCATTCTTGAAAGGTTTGATGGGTCGCCAAAACAGAACGCCCACCATCGTTGTCGTGTGGTCGATTCTGCTTGCTTCCATCTTCTCATTGTTATGGGTGAGGATTGATCCGTTCACTACATCAGTTACAGGTCCCGACGTCGAAGAGTGTGGAATCAACTGCTAG 3237 43.84 METGESVAKVTKNMGLNNCQICGDNVRKTVDGDKFVACDVCTFPVCRPCYEYERKNGNQSCPQCKSRYKRHKGSVAVLGDEDDVELDDDDIDLNYISESHKQKQKIAERMMSWQMAYGQAQDFPPPNYDKEVSLNHIPLLTNGQEVFGELSASSPEHHLVASQGHPRGKPIYSLSFAADINQSPNVRGVDPTKEYNSSGPGNVAWKERVDGWKMKQEKNAVPMSTTHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSLPSSRINPYRMVIVLRLVILVFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLASVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARTWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWSMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPLKPKNRKSGFLSSLCGGSRKNSKSSKRSPEKKKSSKHVDPTVPIFNLDDIEVVEGVGYDDEKALLMSQLTLEQRFGQSAVFVASTLMENGGVLQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAIPLLLYCTLPAVCLLTNKFIIPQISNIASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEEGDFTELYLFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTSVTGPDVEECGINC 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4913173 4920236 + Sed0000501.4 Sed07g0655 719519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0655 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 499 643 IPR029044 -
Sed07g0655 1078 Pfam Zinc-binding RING-finger 11 83 IPR027934 -
Sed07g0655 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1047 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed07g0655 1078 SUPERFAMILY RING/U-box 6 88 - -
Sed07g0655 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Sed07g0655 1078 FunFam Cellulose synthase 469 643 - -
Sed07g0655 1078 MobiDBLite consensus disorder prediction 654 683 - -
Sed07g0655 1078 CDD mRING-HC-C4C4_CesA 19 67 - -
Sed07g0655 1078 ProSiteProfiles Zinc finger RING-type profile. 19 65 IPR001841 -
Sed07g0655 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 366 885 IPR029044 -
Sed07g0655 1078 Pfam Cellulose synthase 352 1071 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0653 Sed-Chr7:4913173 Sed07g0655 Sed-Chr7:4913173 0.00E+00 dispersed
Sed07g0655 Sed-Chr7:4913173 Sed12g2280 Sed-Chr12:33014775 0.00E+00 dispersed
Sed07g0654 Sed-Chr7:4913173 Sed07g0655 Sed-Chr7:4913173 0.00E+00 tandem
Sed07g0655 Sed-Chr7:4913173 Sed07g0656 Sed-Chr7:4913173 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0655 K10999 - csv:101206590 2040.0