Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0658 ATGGCTATTGCTGGGCGCATGAGATCGATCGTCCCTCGATTCAATCAGCTTTTGAAATCGGAGTCACAGACTCAGATTCCTGCTCTCCAAAGAGCCCTACTTTGCCCTACCACCTCCGACTCTGAGGCCTCGAGGAACTATTCAACGGCTTCCAAGAAAAGTGAGGCCAAAGTTAAAGTTCCTCTGGCTTTGTTTGGGGGCACTGGAAACTATGCCTCTGCTTTGTACATTTCTTCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGACAGAGCTTCTTGAACTTGTTGAGGCTTCAAAGAGAAGTGCCACCTTTTCTCAGTTCGCAAAAGATCCCTCAGTGCCTGAAGATACTAGGATCAAGGCTATTACTGATATTTGTGCTGCAGCTAAATTTTCTGAAGTTGTAAAAAACTTTATGGTTATATTGGCTGAGAAGGGAAGGCTGAGATACATAGACAGCATTGCGAAGAGGTTTCAGGAGTTAACAATGGCTCATAGAGGAGAGGTGAAGGCCATTGTGACTACAGTTATCGCCCTCCCTCCTGCAGAAGAGAAAGAACTGAAGGAGACACTGCAAGAAGTTATTGGACAAGGAAAGAAGGTCCTTCTTGAACAGAAGATTGATCCAAGCATTCTTGGTGGTCTAGTAGTCGAATTTGGCGATAAAGTGTTCGACATGTCCATTAAGACTAGAGCACGGCAGATGGAGAGGTTTTTGCGAGAACCCGCTAACTTCGACAGCCTCTGA 750 45.2 MAIAGRMRSIVPRFNQLLKSESQTQIPALQRALLCPTTSDSEASRNYSTASKKSEAKVKVPLALFGGTGNYASALYISSVKANSLDKVETELLELVEASKRSATFSQFAKDPSVPEDTRIKAITDICAAAKFSEVVKNFMVILAEKGRLRYIDSIAKRFQELTMAHRGEVKAIVTTVIALPPAEEKELKETLQEVIGQGKKVLLEQKIDPSILGGLVVEFGDKVFDMSIKTRARQMERFLREPANFDSL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4935964 4939675 - Sed0017110.1 Sed07g0658 719522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0658 249 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 Gene3D - 68 160 IPR026015 -
Sed07g0658 249 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 68 169 IPR026015 -
Sed07g0658 249 Pfam ATP synthase delta (OSCP) subunit 69 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PRINTS ATP synthase delta subunit signature 215 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 Hamap ATP synthase subunit delta [atpD]. 63 242 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 NCBIfam ATP synthase F1 subunit delta 70 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Sed07g0658 249 PANTHER ATP SYNTHASE DELTA CHAIN 1 243 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2544 Sed-Chr4:38225151 Sed07g0658 Sed-Chr7:4935964 4.20E-86 dispersed
Sed04g2545 Sed-Chr4:38225151 Sed07g0658 Sed-Chr7:4935964 2.90E-83 dispersed
Sed07g0658 Sed-Chr7:4935964 Sed07g0659 Sed-Chr7:4935964 9.80E-134 tandem
Sed10g1693 Sed-Chr10:33783706 Sed07g0658 Sed-Chr7:4935964 1.20E-06 transposed
Sed07g0658 Sed-Chr7:4935964 Sed09g1380 Sed-Chr9:37742035 8.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0658 K02137 - csv:101206351 386.341