Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0666 ATGACAGACCCTAATTACTCCAATTCCTTCACCTTCATCCCAATTCCTTCACTTTTCCCCTTTTCCCATTGCCCCCCGCCGCCATCGCCGCCGTCTCCGCCGCAAGCTCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCACCCACCAGCCTTCCTCCACCCCCACCATCCATAATGACGAAATTACCCTTGCCCTTGACATCAGCCTCTCTTGCCCTAGCTCCGATCTCGACAGCCCCGCCGCCAATCCCACCGACGGCGAACTCTCCGGCCACCCTTTGCCGGTCTCCGGCAAGGGCCAGTTCTGGATTCCGACCCCGTCTCAGATCCTTATTGGGCCTACTCAATTCTTTTGCCCTCTTTGCTCTAAAGCCTTTAATCGTTACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATACAGAAAAGGACCAGAGTCTCTAAAAGGAACACAACCAACCGCAATGCTGCGGTTACCGTGCTATTGCTGCGCACCGGGGTGCAAACACAACATCGATAATCCGAGGTCGCGACCGCTCAAGGACTTCCGTACCCTGCAGACACATTACAAGCGCAAGCACGGTATCAAGCCGTTTTCTTGTCGAAAATGCAGCAAAGCCTTTGCCGTGAAAGGTGACTGGCGAACACACGAGAAGAACTGTGGAAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTTGGACACGGTCATGGTGCCCTAGGCCTCGACTACTTTGAGGACGACAATGAACCCGCATCTGAAGTCGAACACGAAGGTATTGTTTAA 831 52.95 MTDPNYSNSFTFIPIPSLFPFSHCPPPPSPPSPPQALPLLNTLSPETTHQPSSTPTIHNDEITLALDISLSCPSSDLDSPAANPTDGELSGHPLPVSGKGQFWIPTPSQILIGPTQFFCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFSCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFEDDNEPASEVEHEGIV 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4992851 4995281 + Sed0019632.1 Sed07g0666 719530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0666 276 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Sed07g0666 276 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 200 224 - -
Sed07g0666 276 MobiDBLite consensus disorder prediction 24 58 - -
Sed07g0666 276 MobiDBLite consensus disorder prediction 39 58 - -
Sed07g0666 276 SMART c2h2final6 117 139 IPR013087 -
Sed07g0666 276 SMART c2h2final6 201 221 IPR013087 -
Sed07g0666 276 SMART c2h2final6 227 250 IPR013087 -
Sed07g0666 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Sed07g0666 276 SUPERFAMILY beta-beta-alpha zinc fingers 184 221 IPR036236 -
Sed07g0666 276 Gene3D Classic Zinc Finger 116 139 - -
Sed07g0666 276 FunFam Zinc finger protein WIP2 170 252 - -
Sed07g0666 276 PANTHER ZINC FINGER PROTEIN WIP2 97 272 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed07g0666 276 Gene3D Classic Zinc Finger 179 252 - -
Sed07g0666 276 SUPERFAMILY beta-beta-alpha zinc fingers 110 139 IPR036236 -
Sed07g0666 276 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0666 Sed-Chr7:4992851 Sed12g1232 Sed-Chr12:8757416 1.00E-91 dispersed
Sed07g0666 Sed-Chr7:4992851 Sed09g1390 Sed-Chr9:37826744 1.40E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39019 PF00096 zf-C2H2 0.0036 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0666 - - - 0.0