Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0689 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCAAATCCCTTCCGATTCGCCGAGAAGAAACCGAAGCCAACGCCGCTGCACCGCCATTCTCATCCCGATTTAGGATTCAGCGTCGACTTATCCATCGGACGACCGGTCGCCGGAGACATAGAACCCGACGACGAAGAAAACGAATCCGACGGTAATGAAGACTCTCCGATTCAGCTCGATCTTCTCCCTCACAATCCTGTTCCTCGAAGCCTAACAAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAGGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCGGCGTCGTACGGCGGCGGCGGAGGGAATGTTTCTTCACGAGCGAGCGACGAAGACGAAAATGGCTCAGCGAGGAAGAAACTCAGACTCTCGAAACAGCAATCCGCGTTTCTGGAAGAGAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACAGGCTCTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAGGTTTGGTTTCAAAACCGAAGAGCCAGGACGAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAGAGATGTTGCGAGACATTAACGGAAGAGAATCGACGCCTTCGAAAGGAGCTTCACGATTTAAGAGCTCTGAAATCTACAAACTCATTCTACATGCAATTACCGGCCACAACACTCACGATGTGCCCATCCTGTGAGAAAGTAACCTCCACCGTCGCGGGCGCCACCGCAGGCGGAGGCAAAGTCTCCAAACAATCTGGTCCTCTTCTTTCCCATTTTCTGCCAAAACAAAATGATAACAAGGGCTGA 840 51.67 MELGLSLGDAPNPFRFAEKKPKPTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDEENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAASYGGGGGNVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLRKELHDLRALKSTNSFYMQLPATTLTMCPSCEKVTSTVAGATAGGGKVSKQSGPLLSHFLPKQNDNKG 279
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5141100 5142449 - Sed0021175.1 Sed07g0689 719553
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0689 279 Coils Coil 194 221 - -
Sed07g0689 279 Pfam Homeodomain 132 186 IPR001356 GO:0003677(InterPro)
Sed07g0689 279 SMART halz 188 231 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g0689 279 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677(InterPro)
Sed07g0689 279 MobiDBLite consensus disorder prediction 102 124 - -
Sed07g0689 279 MobiDBLite consensus disorder prediction 1 135 - -
Sed07g0689 279 MobiDBLite consensus disorder prediction 253 279 - -
Sed07g0689 279 SUPERFAMILY Homeodomain-like 121 189 IPR009057 -
Sed07g0689 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 56 251 IPR050762 -
Sed07g0689 279 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed07g0689 279 FunFam Homeobox-leucine zipper protein 18 118 193 - -
Sed07g0689 279 CDD homeodomain 132 189 IPR001356 GO:0003677(InterPro)
Sed07g0689 279 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g0689 279 CDD bZIP 181 220 - -
Sed07g0689 279 MobiDBLite consensus disorder prediction 20 34 - -
Sed07g0689 279 Gene3D - 136 186 - -
Sed07g0689 279 SMART HOX_1 130 192 IPR001356 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0689 Sed-Chr7:5141100 Sed12g1276 Sed-Chr12:9306669 5.40E-56 dispersed
Sed07g0689 Sed-Chr7:5141100 Sed07g0690 Sed-Chr7:5141100 8.00E-92 tandem
Sed11g1659 Sed-Chr11:31869893 Sed07g0689 Sed-Chr7:5141100 6.70E-30 transposed
Sed05g1370 Sed-Chr5:26628594 Sed07g0689 Sed-Chr7:5141100 3.20E-46 wgd
Sed07g0689 Sed-Chr7:5141100 Sed09g1437 Sed-Chr9:38253639 1.70E-97 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39022 PF00046 Homeodomain 5.90E-16 CL0123 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0689 K09338 - csv:101221600 385.185