Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0689 | ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCAAATCCCTTCCGATTCGCCGAGAAGAAACCGAAGCCAACGCCGCTGCACCGCCATTCTCATCCCGATTTAGGATTCAGCGTCGACTTATCCATCGGACGACCGGTCGCCGGAGACATAGAACCCGACGACGAAGAAAACGAATCCGACGGTAATGAAGACTCTCCGATTCAGCTCGATCTTCTCCCTCACAATCCTGTTCCTCGAAGCCTAACAAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAGGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCGGCGTCGTACGGCGGCGGCGGAGGGAATGTTTCTTCACGAGCGAGCGACGAAGACGAAAATGGCTCAGCGAGGAAGAAACTCAGACTCTCGAAACAGCAATCCGCGTTTCTGGAAGAGAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACAGGCTCTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAGGTTTGGTTTCAAAACCGAAGAGCCAGGACGAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAGAGATGTTGCGAGACATTAACGGAAGAGAATCGACGCCTTCGAAAGGAGCTTCACGATTTAAGAGCTCTGAAATCTACAAACTCATTCTACATGCAATTACCGGCCACAACACTCACGATGTGCCCATCCTGTGAGAAAGTAACCTCCACCGTCGCGGGCGCCACCGCAGGCGGAGGCAAAGTCTCCAAACAATCTGGTCCTCTTCTTTCCCATTTTCTGCCAAAACAAAATGATAACAAGGGCTGA | 840 | 51.67 | MELGLSLGDAPNPFRFAEKKPKPTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDEENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAASYGGGGGNVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLRKELHDLRALKSTNSFYMQLPATTLTMCPSCEKVTSTVAGATAGGGKVSKQSGPLLSHFLPKQNDNKG | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5141100 | 5142449 | - | Sed0021175.1 | Sed07g0689 | 719553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0689 | 279 | Coils | Coil | 194 | 221 | - | - | |
Sed07g0689 | 279 | Pfam | Homeodomain | 132 | 186 | IPR001356 | GO:0003677(InterPro) | |
Sed07g0689 | 279 | SMART | halz | 188 | 231 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed07g0689 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 128 | 188 | IPR001356 | GO:0003677(InterPro) | |
Sed07g0689 | 279 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
Sed07g0689 | 279 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
Sed07g0689 | 279 | MobiDBLite | consensus disorder prediction | 253 | 279 | - | - | |
Sed07g0689 | 279 | SUPERFAMILY | Homeodomain-like | 121 | 189 | IPR009057 | - | |
Sed07g0689 | 279 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 56 | 251 | IPR050762 | - | |
Sed07g0689 | 279 | ProSitePatterns | 'Homeobox' domain signature. | 163 | 186 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed07g0689 | 279 | FunFam | Homeobox-leucine zipper protein 18 | 118 | 193 | - | - | |
Sed07g0689 | 279 | CDD | homeodomain | 132 | 189 | IPR001356 | GO:0003677(InterPro) | |
Sed07g0689 | 279 | Pfam | Homeobox associated leucine zipper | 188 | 222 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed07g0689 | 279 | CDD | bZIP | 181 | 220 | - | - | |
Sed07g0689 | 279 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Sed07g0689 | 279 | Gene3D | - | 136 | 186 | - | - | |
Sed07g0689 | 279 | SMART | HOX_1 | 130 | 192 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0689 | Sed-Chr7:5141100 | Sed12g1276 | Sed-Chr12:9306669 | 5.40E-56 | dispersed | |
Sed07g0689 | Sed-Chr7:5141100 | Sed07g0690 | Sed-Chr7:5141100 | 8.00E-92 | tandem | |
Sed11g1659 | Sed-Chr11:31869893 | Sed07g0689 | Sed-Chr7:5141100 | 6.70E-30 | transposed | |
Sed05g1370 | Sed-Chr5:26628594 | Sed07g0689 | Sed-Chr7:5141100 | 3.20E-46 | wgd | |
Sed07g0689 | Sed-Chr7:5141100 | Sed09g1437 | Sed-Chr9:38253639 | 1.70E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39022 | PF00046 | Homeodomain | 5.90E-16 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0689 | K09338 | - | csv:101221600 | 385.185 |